Although only 44% identical to human karyopherin a,, human karyopherin a2 (Rchl protein) substituted for human karyopherin a, ( (3, 4). Indeed, mapping of the docking site(s) for Nup98 showed it (them) to be located in the repeat-containing N-terminal half of Nup98 (12). Finally, the repeat-containing nucleoporins also contain binding sites for plO (M. Matunis, G.B., and M.H., unpublished data). It has been proposed that the repeatcontaining nucleoporins serve as a stationary phase and the transport factors as the mobile phase in transport across the NPC (12).We showed previously that the a subunit serves as an NLS receptor and proposed that the X3 subunit serves as an adaptor that binds to the a subunit-NLS substrate complex and to the repeat-containing nucleoporins (4). Here we show that the previously used karyopherin a subunit [corresponding to hSRP-1/NPI-1 (14, 15)], now termed karyopherin a1, can be replaced by karyopherin a2 [corresponding to the hSRP-1-related Rchl (16)]. Although karyopherin a, and a2 are only 44% identical, we did not detect any functional difference. We also show that karyopherin 3 is localized in the cytoplasm and at the nuclear rim and is largely lost after digitonin permeabilization of cells. Unlike karyopherin a, which alone cannot bind to the nuclear envelope of digitonin-permeabilized cells, karyopherin , can bind without karyopherin a being present. In an import reaction with all recombinant transport factors, the karyopherin a subunits, Ran, and plO are shown to enter the nucleus, whereas the ,B subunit remains at the nuclear envelope. This result suggests that the heterodimeric karyopherin complex is dissociated during transport. Overlay binding assays showed that the ,B subunit binds to the repeatcontaining nucleoporins. These data are consistent with the previously proposed function of karyopherin J3 as an adaptor between karyopherin a/NLS substrate complex and repeatcontaining nucleoporins.Abbreviations: HSA, human serum albumin; NLS, nuclear localization sequence; NPC, nuclear pore complex; FITC, fluorescein isothiocyanate.