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Geochemical characteristics, mainly of major and trace elements and REE (rare earth elements) of bedded chert and shale/mudstone sequences, across the Permian/Triassic boundary in southwest Japan are examined. The boundary is characterized by the disappearance of bedded cherts, and the interval between the Upper Permian cherts and Lower Triassic (probably Smithian) cherts comprises siliceous shales and organic black mudstones. Bedded cherts are characterized by a gradual depletion of chemical elements from Middle to Upper Permian. However, overlying siliceous shales exhibit a clear enrichment in some elements, especially alkaline metals (such as K, Rb and Cs) and Ti, Th, Y, P,O,, and REE in comparison with elements of the PAAS (post Archean Australian shales). This indicates that average components of the upper continental crust were transported in the boundary interval, possibly caused by volcanic activity. Ce-negative shifting in NASC (North American Shales Composite)-normalized REE patterns is characteristic of this interval, and could be related to the deposition of siliceous rocks in Ce-depleted seawater. This was probably caused by an invasion of water mass with a Ce-negative anomaly into the previously existing water mass of the Paleo-Tethys. Weak negative Eu-anomalies in this interval are suggestive of plagioclase fractionation caused by acid volcanisms and the LREE/HREE ratios in the interval show a slightly light-REE enrichment. Organic black mudstones are characteristically intercalated in the interval. These rocks are usually regarded as a product of oceanic deterioration, but in pelagic conditions, organic materials were formed by high primary production that resulted from the active upwelling of ocean floor water currents with rich nutrients. This may have been caused by the inferred mixing of water masses of the Paleo-Tethys and of the Panthalassa in Early Triassic time which was regarded as an event synchronous with an increase in volcanic activity on highly matured island arcs and/or continents.

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