Circulating extracellular vesicles (EVs) are promising biomarkers for the early diagnosis and prognosis of cancer in a non-invasive manner. However, the rapid and accurate identification of EVs in complex biological samples is technically challenging, which is attributed to the requirement of extensive sample purification and unsatisfactory detection accuracy due to the disturbance of interfering proteins. Herein, a simultaneous binding of double-positive EV membrane protein-based recognition mode (DRM) is proposed. By the combination of DRMmediated toehold activation and G-quadruplex DNAZymecatalyzed etching of Au@Ag nanorods (Au@Ag NRs), we have developed an accurate, non-purified, low-cost, and visual strategy for EV identification. The synchronous binding of double-positive proteins on EV membranes is validated by confocal laser scanning microscopy analysis. This approach exhibits excellent specificity and sensitivity toward EVs ranging from 1.0 × 10 5 to 1.0 × 10 9 particles/mL with a detection limit of 6.31 × 10 4 particles/mL. Moreover, we have successfully realized non-purified EV quantification in complex biological media. In addition, target-initiated catalyzed hairpin assembly (CHA) is integrated with G-quadruplex DNAZyme-catalyzed color variation of Au@Ag NRs; thus, lowbackground EV detection can be achieved by the naked eye. Furthermore, our strategy is easy to adapt to high-throughput formats by using an automatic microplate reader, which could be expected to meet the requirements for high-throughput detection of clinical samples. With its capacities of rapidness, portability, affordability, high throughput, non-purification, and visual detection, this strategy could provide a practical tool for accurate identification of EVs and early diagnosis of cancer.
The
development of isothermal nucleic acid amplification techniques
has great significance for highly sensitive biosensing in modern biology
and biomedicine. A facile and robust exponential rolling circle amplification
(RCA) strategy is proposed based on primer-remodeling amplification
jointly via a repair enzyme and polymerase, and uracil-DNA glycosylase
(UDG) is selected as a model analyte. Two kinds of complexes, complex
I and complex II, are preprepared by hybridizing a circular template
(CT) with a uracil-containing hairpin probe and tetrahydrofuran abasic
site mimic (AP site)-embedded fluorescence-quenched probe (AFP), respectively.
The target UDG specifically binds to complex I, resulting in the generation
of an AP site, followed by cleavage via endonuclease IV (Endo IV)
and the successive trimming of unmatched 3′ terminus via phi29
DNA polymerase, thus producing a useable primer-CT complex that actuates
the primary RCA. Then, numerous complex II anneal with the first-generation
RCA product (RP), generating a complex II–RP assembly containing
AP sites within the DNA duplex. With the aid of Endo IV and phi29,
AFP, as a pre-primer in complex II, is converted into a mature primer
to initiate additional rounds of RCA. So, countless AFPs are cleaved,
releasing remarkably strong fluorescent signals. The biosensor is
demonstrated to enable rapid and accurate detection of the UDG activity
with an improved detection limit as low as 4.7 × 10–5 U·mL–1. Moreover, this biosensor is successfully
applied for UDG inhibitor screening and complicated biological samples
analysis. Compared to the previous exponential RCA methods, our proposed
strategy offers additional advantages, including excellent stability,
optional design of CT, and simplified operating steps. Therefore,
this proposed strategy may create a useful and practical platform
for ultrasensitive detection of low levels of analytes in clinical
diagnosis and fundamental biomedicine research.
scite is a Brooklyn-based organization that helps researchers better discover and understand research articles through Smart Citations–citations that display the context of the citation and describe whether the article provides supporting or contrasting evidence. scite is used by students and researchers from around the world and is funded in part by the National Science Foundation and the National Institute on Drug Abuse of the National Institutes of Health.