We present centennial‐scale records of sea surface temperature and oxygen isotopes from the Celebes Sea, Makassar Strait, Flores Sea, and northwestern Banda Sea, which provide new insights into the variability of Indonesian hydroclimate over the past 25 kyr. Deglacial warming was generally gradual with an amplitude of 3–4 °C. Statistical evaluation of the temperature data suggests that the onset of deglacial sea surface temperatures warming in the tropical Indonesian Sea occurred earlier than the global atmospheric CO2 rise. In contrast to previous terrestrial precipitation records, our ice volume‐corrected δ18O of seawater (δ18Osw) does not support widespread aridity in central Indonesia during the last glacial period. While δ18Osw was substantially enriched during Heinrich Stadial 1 and the Younger Dryas, δ18Osw values were only ~0.2‰ heavier during the Last Glacial Maximum than during the Holocene. Heavier δ18Osw during Heinrich Stadial 1 and the Younger Dryas either reflects a decline in precipitation amount and/or increased δ18O of rainfall in central Indonesia, both likely caused by a southward displacement of the tropical rain belt. Comparison of the Celebes Sea, Makassar Strait, Flores Sea, and Banda Sea records suggests that rainfall isotope and/or amount changes were comparable over Borneo and Sulawesi during the last termination.

We present a high‐resolution (~20 to 100 years temporal resolution) reconstruction of hydrological changes in the Makassar Strait over the last 14 kyr from Core SO217‐18517 retrieved off the Mahakam Delta (1°32.198′S, 117°33.756′E; 698 m water depth) during the SO217 Makassar‐Java Cruise. Sea surface temperatures, based on Mg/Ca of Globigerinoides ruber and alkenone UK′37, and seawater δ18O reconstructions, based on G. ruber δ18O and Mg/Ca, in combination with sortable silt grain size measurements and X‐ray fluorescence (XRF) core scanner derived elemental data provide evidence for increased precipitation during the Bølling‐Allerød (BA) and early Holocene and for warmer and more saline surface waters and a decrease in the intensity of the Indonesian Throughflow (ITF) during the Younger Dryas (YD). XRF derived Log (Zr/Rb) records, sortable silt data and increased sedimentation rates indicate decreased winnowing, interpreted as a slowdown of the ITF thermocline flow during the YD. We attribute this decline in ITF intensity to slowdown of the Atlantic meridional overturning circulation during the YD. We suggest that changes in Makassar Strait surface hydrology during this interval of Northern Hemisphere cooling and Southern Hemisphere warming were related to a southward displacement of the Intertropical Convergence Zone.

We present two 40 year records of monthly coral Sr/Ca ratios from the eastern pole of the Indian Ocean Dipole. A modern coral covers the period from 1968 to 2007. A sub-fossil coral derives from the medieval climate anomaly (MCA) and spans 1100–1140 ad. The modern coral records SST variability in the eastern pole of the Indian Ocean Dipole. A strong correlation is also found between coral Sr/Ca and the IOD index. The correlation with ENSO is asymmetric: the coral shows a moderate correlation with El Niño and a weak correlation with La Niña. The modern coral shows large interannual variability. Extreme IOD events cause cooling > 3 °C (1994, 1997) or ~ 2 °C (2006). In total, the modern coral indicates 32 warm/cool events, with 16 cool and 16 warm events. The MCA coral shows 24 warm/cool events, with 14 cool and 10 warm events. Only one cool event could be comparable to the positive Indian Ocean Dipole in 2006. The seasonal cycle of the MCA coral is reduced (< 50% of to the modern) and the skewness of the Sr/Ca data is lower. This suggests a deeper thermocline in the eastern Indian Ocean associated with a La Niña-like mean state in the Indo-Pacific during the MCA.