Background Genomic surveillance of SARS-CoV-2 in Portugal was rapidly implemented by the National Institute of Health in the early stages of the COVID-19 epidemic, in collaboration with more than 50 laboratories distributed nationwide. Methods By applying recent phylodynamic models that allow integration of individual-based travel history, we reconstructed and characterized the spatio-temporal dynamics of SARS-CoV-2 introductions and early dissemination in Portugal. Results We detected at least 277 independent SARS-CoV-2 introductions, mostly from European countries (namely the United Kingdom, Spain, France, Italy, and Switzerland), which were consistent with the countries with the highest connectivity with Portugal. Although most introductions were estimated to have occurred during early March 2020, it is likely that SARS-CoV-2 was silently circulating in Portugal throughout February, before the first cases were confirmed. Conclusions Here we conclude that the earlier implementation of measures could have minimized the number of introductions and subsequent virus expansion in Portugal. This study lays the foundation for genomic epidemiology of SARS-CoV-2 in Portugal, and highlights the need for systematic and geographically-representative genomic surveillance.
<p>Rust is the main disease of coffee. Recently, cercospora leaf spot has grown in importance, intensifying defoliation and decreasing grain yield. The aim of this study was to use a mixed model approach to select the best progenies of "Big Coffee VL" for resistance to rust and cercospora leaf spot. We used 12 progenies with high bean yields. Based on bean size, leaves and plant size, plants within each progeny were classified as "small" (P), "medium" (M) and "large" (G). The experimental design was completely randomized, with six replicates and one plant per plot. Six measurements were carried out every 15 days for each plant by selecting 20 fully exposed leaves with higher and lower sun exposures. The measurements summarized disease severity using two diagrammatic scales to obtain the area of the leaf under rust or Cercospora leaf spot. A mixed model approach was used to calculate genotypic value (GV) and heritability estimates. The Mulamba and Mock index was used to select the most resistant progenies, in which the sum of rankings was weighted by a heritability value. Five progenies were selected; three progenies were G (G17, G9, and G12), one progeny was M (M5) and another progeny P (P23). Among these, M5 and P23 progenies are the most productive and may have potential use in future studies. The statistical approach used to predict promising genotypes facilitates the selection of genetically superior individuals for maximizing yields.</p>
The objective of this study was to evaluate the genetic divergence of coffee genotypes resistant to rust, of the Germplasm Bank from Minas Gerais, based on anatomical features. A total of 12 foliar anatomical characteristics were assessed, and Mahalanobis distance was used to quantify the genetic divergence between genotypes. The Tocher method and the hierarchical method of UPGMA (Unweighted Pair-Group Method Using Arithmetic Averages) were used as group strategy. Moreover, relative contribution analyses of the variables were made. There was genetic variability between genotypes, and the analysis of Tocher and UPGMA grouping separated the genotypes into five and seven distinct groups, respectively. The MG 0582 genotype stood out as the most divergent based on the evaluated anatomical features. There is great genetic variability for the characteristics of foliar anatomy among the 15 genotypes evaluated, allowing to select superior genotypes based on these characteristics.
The identification of morphophysiological traits responsible for a better plant behavior when infected is useful for cultivar selection, and become crucial for breeding. We investigated the morphophysiological behavior of coffee genotypes before and after inoculation with the pathogen Hemileia vastatrix, causal agent of coffee rust. With multivariate techniques we identified the characteristics that most contribute to total genetic divergence of the genotypes. Ten genotypes of Coffea arabica from the Germplasm Bank of Coffee from Minas Gerais were sown in a nursery and then take to a greenhouse with controlled temperature and humidity. After one month of acclimatization, the artificial inoculation with the fungus H. vastatrix was carried out. The anatomical and physiological evaluations were performed 1 day before inoculation and 160 days after inoculation. When the first symptom emerged, plants were evaluated according to a descriptive scale for coffee rust. We observed significant differences in rust severity and ostiole opening between genotypes. Different groups were formed by the K-means method, based on morphophysiological characteristics. This shows that genetic variability exists between the coffee genotypes evaluated before and after inoculation with the pathogen. The most important characteristics that contributed to the total genetic divergence were xylem vessel diameter and stomatal conductance. In conclusion, inoculation with H. vastatrix caused a change in coffee genotypes based on morphophysiological characteristics.
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