aThe C a -H bond dissociation energies (BDE) in glycine and alanine peptide models have been assessed using selected theoretical methods from the G3 and, in part, G4 family. The BDE values (and thus the stability of the respective C a peptide radicals) are shown to depend significantly on the level of theory, the size of the model system and the coverage of conformational space. For the largest dipeptide models chosen here, BDE(C a -H) values of +363.8 kJ mol 21 (glycine) and +372.3 kJ mol 21 (alanine) have been obtained at G3B3 level. This reconfirms earlier findings that glycyl peptide radicals are more stable than radicals derived from alanine or any other amino acid carrying substituents at the C a position.
The reactions between ground-state oxygen atoms (O((3)P)) and the ammonia (NH(3)) and hydrazine (N(2)H(4)) molecules have been studied using electronic-structure and dynamics calculations. Ab initio calculations have been used to characterize the primary reaction channels accessible at hyperthermal energies. These reaction channels are i) hydrogen abstraction, O + NH(3)(N(2)H(4)) --> OH + NH(2)(N(2)H(3)), ii) H-elimination O + NH(3)(N(2)H(4)) --> H + ONH(2)(ON(2)H(3)), and iii) N-N breakage (in the reaction involving hydrazine), O + N(2)H(4) --> ONH(2) + NH(2). Hydrogen abstraction is the lowest-barrier process, followed by N-N breakage and H-elimination. Comparison of our highest-accuracy calculations (CCSD(T)/CBS//MP2/aug-cc-pVDZ) with a variety of lower-cost electronic-structure methods shows that the BHandHLYP method, in combination with the 6-31G* basis set, captures remarkably well the essential features of the potential-energy surface of all of the reaction channels investigated in this work. Using directly the BHandHLYP/6-31G* combination, we have propagated quasiclassical trajectories to characterize the dynamics of the O + NH(3) and O + N(2)H(4) reactions at hyperthermal energies. The trajectory calculations reveal that hydrogen abstraction is the dominant reaction channel, with cross sections between a factor of 2 and an order of magnitude larger than those for the H-elimination and N-N breakage channels. The dynamics calculations also indicate that most of the energy is partitioned into products relative translation but significant vibrational excitation of products is possible as well. Analysis of angular distributions and opacity functions suggests that whereas the hydrogen-abstraction reactions proceed through a mechanism with a substantial component of stripping dynamics, H-elimination and N-N breakage are dominated by rebound dynamics.
scite is a Brooklyn-based organization that helps researchers better discover and understand research articles through Smart Citations–citations that display the context of the citation and describe whether the article provides supporting or contrasting evidence. scite is used by students and researchers from around the world and is funded in part by the National Science Foundation and the National Institute on Drug Abuse of the National Institutes of Health.
customersupport@researchsolutions.com
10624 S. Eastern Ave., Ste. A-614
Henderson, NV 89052, USA
This site is protected by reCAPTCHA and the Google Privacy Policy and Terms of Service apply.
Copyright © 2025 scite LLC. All rights reserved.
Made with 💙 for researchers
Part of the Research Solutions Family.