We studied the abundance of common zooplankton on 8 dates and at 5 locations on the shelf off the Lofoten Islands, northern Norway, between September 2013 and August 2014. We tested for relationships between environmental variability and abundances. We found that, of 17 zooplankton taxa or groups for which we recorded abundances, 4 omnivorous or carnivorous groups persistently differed in abundance between stations. This difference probably reflected relatively deep centres of distribution in the water column, and abundances of these species were positively associated with bottom depth. In 10 taxa or groups, abundance correlated with sampling date or temperature, salinity, or fluorescence, but generally not with bottom depth. Most of these taxa were consumers on low trophic levels, with a vertical distribution often associated with near-surface waters. In the remaining taxa or groups, no association between abundance and the environment or with time of sampling was established. Our results suggest that on-shelf abundances of zooplankton with intermediate-to-deep vertical distribution patterns are mainly limited by bathymetry, while abundance variations in zooplankton with a predominately near-surface distribution are driven by intra-annual environmental variability.

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The complete mitochondrial genome of Calanus simillimus is 27,876 bp in length (GenBank accession OK500294) and containing 13 protein-coding genes (PCGs), 2 rRNA genes, 22 transfer RNA genes. The gene order is novel compared to other Calanus species and copepods with sequenced mitogenomes. Phylogenetic analysis suggests that C. simillimus represent a fourth group within Calanus genus in addition to C. hyperboreus, C. finmarchicus and C. helgolandicus groups. The complete mitochondrial genome of C. simillimus will be useful for species identification, population genetics, phylogenetic and evolutionary studies among copepods.

Zooplankton predator–prey relations in northern Norwegian fjords are highly variable in time and space, and the mechanisms driving this variability are still poorly understood. Replicate Juday net sampling in October and February from 1983 to 2005, which included five repeated tows from bottom to surface, was conducted in Saltfjord and Mistfjord, northern Norway. The time-series provided evidence of in situ variability in species abundance, as well as seasonal and interannual changes in standing stock abundance. The shallow sill of one fjord caused accumulation of coastal water in the fjord’s basin, while the other fjord’s deeper sill selected denser water of Atlantic origin from the same open shelf habitat. The selective advection caused differences in the immigration of species recruiting to the fjords’ specific overwintering communities of zooplankton. Statistical analyses of the cumulated replicate data indicated significant in situ variability in the spatial density of species. Cases with an abundance of carnivores relating positively to other species probably resulted from the carnivores’ attraction to patches with concentrations of prey. Interspecific negative density relations likely indicated either predator avoidance or substantial trophic activity during the sampling. During years of high abundance, some wintering stocks of carnivores evidently reduced the local stocks of overwintering prey. We conclude that predator–prey interactions and stock variability in Subarctic fjords result from complex bio-geophysical interactions that occur on the scales of local habitats and basin-scale population systems.