DNA sequences accumulating in the International Nucleotide Sequence Databases (INSD) form a rich source of information for taxonomic and ecological meta-analyses. However, these databases include many erroneous entries, and the data itself is poorly annotated with metadata, making it difficult to target and extract entries of interest with any degree of precision. Here we describe the web-based workbench PlutoF, which is designed to bridge the gap between the needs of contemporary research in biology and the existing software resources and databases. Built on a relational database, PlutoF allows remote-access rapid submission, retrieval, and analysis of study, specimen, and sequence data in INSD as well as for private datasets though web-based thin clients. In contrast to INSD, PlutoF supports internationally standardized terminology to allow very specific annotation and linking of interacting specimens and species. The sequence analysis module is optimized for identification and analysis of environmental ITS sequences of fungi, but it can be modified to operate on any genetic marker and group of organisms. The workbench is available at http://plutof.ut.ee.

Recent phylogenetic studies on Nematinae based on DNA sequences have shown extensive incongruencies with current nomenclature of genus-group taxa. Here, we expand previous DNA sequence datasets based on three genes (CoI, Cytb, and EF-1α), to include a fourth (NaK) and more genera. The analyses largely confirm the previous findings, particularly the existence of two well-supported large clades, Euura and Pristiphora, together comprising more than 75% of the species of Nematinae. Basal relationships within these two clades remain poorly resolved, mirroring the difficulties in delimiting genera based on morphology. In addition, a moderately supported small clade, Nematus, is found. The relationships between the Euura, Pristiphora, and Nematus clades are uncertain. Therefore, to stabilize the nomenclature we treat these clades as genera. This taxonomic treatment results in numerous new combinations of species names. The following synonymies are

The Empria longicornis species group (Hymenoptera, Tenthredinidae) is revised. Empria japonica Heidemaa & Prous, sp. nov. is described from Japan. The lectotypes of Empria gussakovskii Dovnar-Zapolskij, 1929, E. konowi Dovnar-Zapolskij, 1929, Poecilosoma longicornis Thomson, 1871, P. mongolica Konow, 1895, and P. tridens Konow, 1896 are designated. Empria konowi Dovnar-Zapolskij, 1929 (syn. nov.) and E. gussakovskii Dovnar-Zapolskij, 1929 (syn. nov.) are synonymized with E. tridens (Konow, 1896), and Empria waldstaetterense Liston, 1980 (syn. nov.) with E. alector Benson, 1938. Empria alpina Benson, 1938 and E. minuta Lindqvist, 1968, earlier misidentified as E. gussakovskii, are treated as valid species. Nine species are confirmed to belong in the longicornis-group: E. alector, E. alpina, E. basalis, E. japonica, E. loktini, E. longicornis, E. minuta, E. mongolica, and E. tridens. Distributional data of the species and a key to the imagines are provided. Ex ovo rearings of the four most common and often misidentified species in the group (E. alector, E. basalis, E. longicornis, and E. tridens) were carried out to verify their host plants and male conspecifics. External morphology, morphometrics (geometric and traditional), and DNA sequences (mitochondrial COI and nuclear ITS1 and ITS2) are used to delimit species within the group and to assess their phylogenetic relationships. Mitochondrial DNA sequences analyzed are mostly regarded as unsuitable for species circumscription, DNA barcoding and for reconstructing species phylogeny within the group. In this regard, analyses of the ITS sequences yielded more concordant results.

The 'Symphyta' is a paraphyletic assemblage at the base of the order Hymenoptera, comprising 14 families and about 8750 species. All have phytophagous larvae, except for the Orussidae, which are parasitoids. This study presents and evaluates the results of DNA barcoding of approximately 5360 specimens of 'Symphyta', mainly adults, and 4362 sequences covering 1037 species were deemed of suitable quality for inclusion in the analysis. All extant families are represented, except for the Anaxyelidae. The majority of species and specimens are from Europe, but approximately 38% of the species and 13% of the specimens are of non-European origin. The utility of barcoding for species identification and taxonomy of 'Symphyta' is discussed on the basis of examples from each of the included families. A significant level of cryptic species diversity was apparent in many groups. Other attractive applications include the identification of immature stages without the need to rear them, community analyses based on metabarcoding of bulk samples and association of the sexes of adults.