Microarray-based analysis of the transcriptional profiles of the genetically distinct Staphylococcus aureus strains COL, GP268, and Newman indicate that a total of 251 open reading frames (ORFs) are influenced by B activity. While B was found to positively control 198 genes by a factor of >2 in at least two of the three genetic lineages analyzed, 53 ORFs were repressed in the presence of B . Gene products that were found to be influenced by B are putatively involved in all manner of cellular processes, including cell envelope biosynthesis and turnover, intermediary metabolism, and signaling pathways. Most of the genes and/or operons identified as upregulated by B were preceded by a nucleotide sequence that resembled the B consensus promoter sequence of Bacillus subtilis. A conspicuous number of virulence-associated genes were identified as regulated by B activity, with many adhesins upregulated and prominently represented in this group, while transcription of various exoproteins and toxins were repressed. The data presented here suggest that the B of S. aureus controls a large regulon and is an important modulator of virulence gene expression that is likely to act conversely to RNAIII, the effector molecule of the agr locus. We propose that this alternative transcription factor may be of importance for the invading pathogen to fine-tune its virulence factor production in response to changing host environments.Transcription of DNA into RNA is catalyzed by RNA polymerase. In bacteria, one RNA polymerase generates nearly all cellular RNAs, including ribosomal, transfer, and mRNA. This enzyme consists of six subunits, ␣ 2 ␤␤Ј, with ␣ 2 ␤␤Ј forming the catalytically competent RNA polymerase core enzyme (E). The core is capable of elongation and termination of transcription, but it is unable to initiate transcription at specific promoter sequences. The subunit, which when bound to E forms the holoenzyme (E-), directs the multisubunit complex to specific promoter elements and allows efficient initiation of transcription (reviewed in references 5 and 6). Therefore, factors provide an elegant mechanism in eubacteria to allow simultaneous transcription of a variety of genetically unlinked genes, provided all of these genes share the same promoter specificities.In addition to the housekeeping sigma subunit, 70 or A , most bacteria produce one or more additional subunits, termed alternative factors, which direct the respective Ecomplex to distinct classes of promoters that contain alternative factor-specific sequences. Alternative factors have been shown in various bacteria to be of importance for survival under extreme conditions (7,14,23,31,38,44,49,60,68,73,78,79,80) and to influence virulence and pathogenicity (8,13,32,35,37,42,51,57,61,71,75,78,81).At least six alternative factors are produced by the enteric bacterium Escherichia coli (reviewed in reference 6). Genomic sequence analysis suggests that many alternative factors also exist in a number of other pathogenic species such as Treponema palladium (4 alternative f...

Derivatives of the widely used laboratory strain Staphylococcus aureus NCTC8325, which are natural rsbU mutants, were shown to be unable to produce RsbU, a positive regulator of the alternative sigma factor B . The lack of RsbU prevented the heat-dependent production of B -controlled transcripts and resulted in reduced H 2 O 2 and UV tolerance, enhanced alpha-hemolysin activity, and the inability to produce the alkaline shock protein Asp23. After 48 h of growth, rsbU mutant strains failed to accumulate staphyloxanthin, the major stationary-phase carotenoid. Staphylococcus aureus is a major human pathogen causing a wide spectrum of diseases and able to survive under a variety of extreme conditions. In many bacteria, alternative sigma factors have been shown to be important for survival under extreme conditions by regulating the coordinate expression of stress response genes triggered by environmental as well as growth-dependent stimuli. As part of the RNA polymerase holoenzyme, the sigma subunits are responsible for the binding of the catalytic core to specific promoter regions and the initiation of transcription of downstream genes. Thus, sigma factors provide an elegant mechanism in eubacteria to ensure simultaneous transcription of a variety of genetically unlinked genes, provided all these genes share the critical promoter elements. The alternative sigma factor B of Bacillus subtilis has been shown to control the transcription of more than 100 genes in response to different stimuli such as heat, ethanol, or salt stress; acid shock; or glucose, oxygen, or phosphate starvation (for reviews see references 23 and 46). In B. subtilis, B activity itself is controlled posttranslationally by a multicomponent signal transduction pathway comprising eight regulatory proteins which-with the exception of Obg and RsbPare coexpressed with the sigma factor as part of the same operon (3,7,24,40,44,48,50). One of these proteins, RsbU, a positive regulator of B , is essential for the activation of B during exponential growth after environmental stress (45,48,50). RsbU activity itself is controlled by the action of further Rsb proteins encoded by the operon (1, 19, 50).An operon encoding four proteins, sharing strong primary amino acid similarity with RsbU, RsbV, RsbW, and B of B. subtilis, has been identified in S. aureus (27,49). The putative S. aureus B was shown to act as a sigma factor initiating the transcription of sarC from the sar P3 promoter (17, 32). RsbW, on the other hand, was shown to be an anti-sigma factor, regulating B activity posttranslationally (32). B is activated upon heat shock in S. aureus strain MA13 (20) and controls the transcription of at least 30 genes encoding cytoplasmic proteins (21). Although B was shown to be involved in the heat and acid shock response of strain MA13, it had no apparent function in strain 8325-4, either in the heat shock response, starvation survival, or pathogenicity, in a mouse abscess model (10,20).A phenotypic comparison of genetically distinct wild-type S. aureus strains a...

Carbon catabolite protein A (CcpA) is known to function as a major regulator of gene expression in different gram-positive organisms. Deletion of the ccpA homologue (saCOL1786) in Staphylococcus aureus was found to affect growth, glucose metabolization, and transcription of selected virulence determinants. In liquid culture, deletion of CcpA decreased the growth rate and yield; however, the effect was only transient during the exponential-growth phase as long as glucose was present in the medium. Depletion of glucose and production of lactate was delayed, while the level of excretion of acetate was less affected and was even higher in the mutant culture. On solid medium, in contrast, growth of the ⌬ccpA mutant resulted in smaller colonies containing a lower number of CFU per colony. Deletion of CcpA had an effect on the expression of important virulence factors of S. aureus by down-regulating RNAIII, the effector molecule of the agr locus, and altering the transcription patterns of hla, encoding ␣-hemolysin, and spa, encoding protein A. CcpA inactivation markedly reduced the oxacillin resistance levels in the highly methicillin-resistant S. aureus strain COLn and the teicoplanin resistance level in a glycopeptide-intermediateresistant S. aureus strain. The presence of CcpA in the capsular polysaccharide serotype 5 (CP5)-producing strain Newman abolished capsule formation and decreased cap operon transcription in the presence of glucose. The staphylococcal CcpA thus not only is involved in the regulation of carbon metabolism but seems to function as a modulator of virulence gene expression as well.Carbon catabolite repression (CCR) in bacteria is a widespread, global regulatory phenomenon that allows modulation of the expression of genes and operons involved in carbon utilization and metabolization in the presence of preferred carbon source(s). In CCR, the presence of a preferred carbon source represses the expression of genes and operons whose products are involved in the metabolism of alternative, lesspreferred carbon sources. In low-GC gram-positive bacteria, CCR is achieved via transcriptional control, inducer exclusion, and induction prevention (reviewed in references 55 and 60). In this group of bacteria, a common mechanism for transcriptional control has evolved that is mediated via the proteins phosphotransferase HPr, the bifunctional HPr kinase-phosphatase (HPrK/P), and the pleiotropic regulator CcpA (catabolite control protein A). CCR in Bacillus subtilis has been studied extensively and is thought to serve as the prototype of CCR-regulated gene expression in gram-positive organisms (reviewed in reference 52). In B. subtilis, regulation of transcription of catabolite-repressive genes is exerted mainly through the binding of CcpA to specific cis-acting DNA sequences called catabolite-responsive elements (CREs). The DNA-binding activity of CcpA itself is triggered by HPr or its regulatory paralog Crh, which, in the presence of glucose, are phosphorylated by HPrK/P on regulatory seryl residues, in which st...

Neutrophils are indispensable for clearing infections with the prominent human pathogen Staphylococcus aureus. Here, we report that S. aureus secretes a family of proteins that potently inhibits the activity of neutrophil serine proteases (NSPs): neutrophil elastase (NE), proteinase 3, and cathepsin G. The NSPs, but not related serine proteases, are specifically blocked by the extracellular adherence protein (Eap) and the functionally orphan Eap homologs EapH1 and EapH2, with inhibitory-constant values in the low-nanomolar range. Eap proteins are together essential for NSP inhibition by S. aureus in vitro and promote staphylococcal infection in vivo. The crystal structure of the EapH1/NE complex showed that Eap molecules constitute a unique class of noncovalent protease inhibitors that occlude the catalytic cleft of NSPs. These findings increase our insights into the complex pathogenesis of S. aureus infections and create opportunities to design novel treatment strategies for inflammatory conditions related to excessive NSP activity.immune evasion | bacteria | phagocytes