Sets of short (12 residues) cellulose-bound synthetic overlapping peptides derived from the sequences of the variable regions of the heavy and light chains of three different antibodies (an anti-thyroglobulin antibody, the HyHEL-5 anti-lysozyme antibody, and an anti-angiotensin II antibody) were used to systematically assess the antigen binding capacity of peptides from the antibody paratope outside their natural molecular context. Peptides enclosing one or several of the complementarity determining region (CDR) residues had antigen binding activity, although the most active peptides were not necessarily those bearing the greatest number of CDR residues. Several residues from the framework region, preceding or following the CDR, were found to play a role in binding. Affinity constants from 4.1 ؋ 10 ؊7 to 6.7 ؋ 10 ؊8 M ؊1 for the soluble form of 9 lysozymebinding dodecapeptides were measured by BIAcore analysis. Alanine scanning of lysozyme-binding hexapeptides from the HyHEL-5 sequence identified 38 residues important for binding, of which 22 corresponded to residues that had been shown by x-ray crystallography to be at the interface between HyHEL-5 and lysozyme. Our results could be of interest for the rational identification of biologically active peptides derived from antibody sequences and in providing an experimental basis for mutagenesis of the antibody paratope.Antibody molecules bind antigens with high affinity and specificity by synergistically using multiple noncovalent forces. The combining site (paratope), whose shape is complementary to the epitope on the antigen, is made up of the hypervariable regions, also called complementarity determining regions (CDRs) 1 (1). It is commonly accepted that there are three CDRs in the light chain (L1, L2, and L3) and in the heavy chain (H1, H2, and H3). These CDRs fold into turn structures that are stabilized by the ␤-sheet framework of the variable domains. The interface between antibodies and antigens has been precisely described by x-ray crystallographic studies, and several complexes between Fab fragments of monoclonal antibodies and peptide or protein antigens have been recently described (for reviews see Refs. 2-4). The structures of antibody-antigen complexes indicate that at least four of the CDRs, and in some cases all six CDRs, contribute to antigen binding (5). Residues in the framework have rarely been reported to participate in this interaction (6, 7).Antibody-peptide or antibody-protein complexes are excellent model systems to study the physicochemical requirements for molecular recognition. Unfortunately, it is a difficult task to obtain crystals suitable for the structural elucidation of antibody fragments in complex with proteins or peptides. Therefore, other approaches to obtain information about the key residues involved in the interaction would be very useful, in particular for paratope mutagenesis. Some workers have demonstrated that synthetic peptides derived from the amino acid sequences of CDRs bind antigens with specificities similar to t...

No abstract

The antigenic nature of 15 anti-human thyroglobulin (hTg) monoclonal antibody (mAb) epitopes was studied by two different approaches. First, we tested two successive protease-digest products of hTg. Only four mAb from the same cluster of reactivity recognized a low-molecular weight peptide, the other mAb only bound native hTg or high-molecular weight digest fractions. Second, these 15 mAb were used to immunoscreen hTg expression libraries. Only the same four mAb revealed immunoreactive clones corresponding to region 1149-1295 on the hTg primary sequence. After subcloning, this antigenic determinant was reduced to a 102-amino acid peptide (hTg region 1149-1250). The two different methodologies were coherent and complementary, and demonstrated that hTg sequence 1149-1250 is the target for this cluster of four mAb. Moreover, anti-hTg autoantibodies which cross-reacted with these mAb bound the 102-amino acid peptide. This epitope was the one most frequently detected by sera from autoimmune thyroid disease. The data confirm the presence of an immunodominant domain in the central part of the hTg molecule and suggest that this mAb epitope may be a powerful probe for the diagnosis of autoimmune thyroid disorders.

We have designed two original sets of oligonucleotide primers hybridizing the relatively conserved motifs within the immunoglobulin signal sequences of each of the 15 heavy chain and 18 kappa light chain gene families. Comparison of these 5P P primers with the immunoglobulin signal sequences referenced in the Kabat database suggests that these oligonucleotide primers should hybridize with 89.4% of the 428 mouse heavy chain signal sequences and with 91.8% of the 320 kappa light chain signal sequences with no mismatch. Following PCR amplification using the designed primers and direct sequencing of the amplified products, we obtained full-length variable sequences belonging to major (VH1, VH2, VH3, VU U1 and VU U21) but also small-sized (VH9, VH14, VU U2, VU U9A/9B, VU U12/13, VU U23 and VU U33/34) gene families, from nine murine monoclonal antibodies. This strategy could be a powerful tool for antibody sequence assessment whatever the V gene family before humanization of mouse monoclonal antibody or identification of paratope-derived peptides.z 1999 Federation of European Biochemical Societies.

Spleen cells of Biozzi-HR mice immunized with human thyroglobulin (hTg) were fused with P3-X63-Ag8.653 mouse myeloma cells. Twenty monoclonal antibodies (MAbs) selected by an enzyme immunoassay (indirect ELISA) were produced, purified and characterized. The equilibrium association constant (Ka) of one of the MAbs, determined by Scatchard analysis of the ELISA data, was found to be 2 X 10(9) M-1; the Ka of the other MAb, estimated from titration curves by comparison with the aforementioned MAb, ranged from 8 X 10(9) M-1 to 6 X 10(7) M-1. The reaction between the MAb and hTg was not inhibited by thyroxin (T4), triiodothyronine (T3) and triiodothyropropionic acid (DT3). Species specificity of the MAb was studied using bovine and porcine Tgb. The topology of the MAb was investigated by competitive inhibition immunoassays. Seven distinct antigenic regions were identified.