The abundance and composition of the phytoplankton community off the coast of Cape Canaveral, Florida was examined from Fall 2013 to Summer 2015. The region is a shallow shelf environment. Water samples were collected quarterly at 24 sites from the surface and bottom of the water column; temperature and nutrient concentrations were determined. Photoautotrophic picoplanktonic prokaryotes were consistently important in terms of numerical abundance and biomass throughout the study. Among the cyanobacteria, a surface bloom of the nitrogen-fixing filamentous species Trichodesmium was observed in Fall 2013. Dinoflagellates and diatoms were also major contributors to phytoplankton biomass. Many of the dominant dinoflagellates were mixotrophic or heterotrophic species. Nanoplanktonic eukaryotic algae were also periodically an important group in terms of biomass, such as prasinophytes (Chlorophyta). No consistent and reoccurring spatial patterns were observed, likely due to the dynamic water circulation in the open Cape Canaveral shelf environment. Depth-related differences in biomass were observed for dinoflagellates and diatoms. Dinoflagellate biomass was on average higher in surface samples, related to their motility. Conversely, diatom biomass was on average higher in bottom waters, reflecting the negative buoyancy of most species and the potential for re-suspension of cells from the sediment surface. The strong increase in the importance of photoautotrophic picoplanktonic prokaryotes biomass observed in Year 2 of the study may reflect the influence of high rainfall resulting from El Niño conditions on nutrient loads from regional land masses, as indicated by increases in phosphorus concentrations.

Seasonal patterns of phytoplankton biomass and composition in the inner continental shelf off Cape Canaveral on the east coast of Florida were examined for a 6-year period (2013–2019). In situ water samples were collected and analyzed for chlorophyll a, phytoplankton biomass and composition, along with water quality parameters. Regional satellite data on chlorophyll a, and temperature was also obtained from NASA. Average chlorophyll a values over the study period ranged from 0.63 ± 0.03 μg L−1 in the summer to 2.55 ± 0.10 μg L−1 in the fall. Phytoplankton community composition also showed seasonal differences, with persistent dominance by picoplanktonic cyanobacteria in the summer, but mixed dominance by picocyanobacteria and dinoflagellates in the fall. Seasonal differences were attributed to a shift in predominant seasonal wind directions, which drive water along the coast from the north in the fall and winter, but from the south in the spring and summer, including eddies and upwelling from the Gulf Stream. Water masses moving along the Florida coast from the north are influenced by nutrient and phytoplankton-enriched inputs from estuaries along the north coast of Florida, explaining the higher phytoplankton biomass levels on the Cape Canaveral shelf in the fall and winter. Seasonal patterns observed in this study demonstrate the importance of allochthonous influences on phytoplankton biomass and composition, and highlight the potential sensitivity of phytoplankton communities to continuing cultural eutrophication and future climate changes, including the frequency and intensity of tropical storms, and alterations in discharges from land.