Much of the dense gas in molecular clouds has a filamentary structure but the detailed structure and evolution of this gas is poorly known. We have observed 54 cores in infrared dark clouds (IRDCs) using N 2 H + (1-0) and (3-2) to determine the kinematics of the densest material, where stars will form. We also observed N 2 D + (3-2) towards 29 of the brightest peaks to analyse the level of deuteration which is an excellent probe of the quiescent of the early stages of star formation. There were 13 detections of N 2 D + (3-2). This is one of the largest samples of IRDCs yet observed in these species. The deuteration ratio in these sources ranges between 0.003 and 0.14. For most of the sources the material traced by N 2 D + and N 2 H + (3-2) still has significant turbulent motions, however three objects show subthermal N 2 D + velocity dispersion. Surprisingly the presence or absence of an embedded 70µm source shows no correlation with the detection of N 2 D + (3-2), nor does it correlate with any change in velocity dispersion or excitation temperature. Comparison with recent models of deuteration suggest evolutionary time-scales of these regions of several freefall times or less.