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Stratigraphic and paleontological investigations in Mugi Town, on the Pacific coast of Shikoku Island, revealed evidence of as many as five tsunami inundations from events along the Nankai Trough between 5581 and 3640 cal yr BP. Nine event deposits (E1-E9) were identified in cores ranging in length from 2 to 6 m, consisting of sandy and gravelly layers interbedded with organic-rich mud. Sedimentary structures in the event deposits observed by computed tomography included normal grading and sharp lower stratigraphic contacts. Event deposits E3, E6, E7, and E8 contained mainly brackish-marine diatom species, suggesting that they had been deposited during inundation by seawater. In addition, fossil diatom assemblages were markedly different above and below event deposits E3, E4, E6, and E8. For example, assemblages below event deposit E6 were dominated by a freshwater species (Ulnaria acus), whereas assemblages above it were predominantly brackish-marine (Diploneis smithii, Fallacia forcipata, and Fallacia tenera). We attributed these changes to the increase of marine influence due to coastal subsidence associated with subduction-zone earthquakes, as documented in the 1946 Showa-Nankai earthquakes. We conclude that event deposits E3, E6, and E8 and perhaps E4 and E7 were deposited by tsunamis generated by subduction zone earthquakes along the Nankai Trough. The ages of these event deposits, as constrained by ten radiocarbon ages, suggest that some of the tsunamis that impacted Mugi Town were correlated with those reported elsewhere along the Nankai Trough, thereby complementing the existing but still incomplete geological record for these events.

Diatom and foraminiferal analyses of the Pleistocene turbidites in the Cascadia margin suggest that turbidite sediments originated mainly in the landward shelf area and were displaced to the present deep-sea site, which maintained a constant depth during this time. Abundant and highly fluctuating occurrences of shallowmarine and nonmarine diatoms may reflect the global glacioeustatic sea level changes in the Pleistocene.

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Fossil evidence indicates that modern assemblages of temperate nonmarine planktonic diatoms began near the middle/late Miocene boundary when the genus Actinocyclus, an important constituent of lacustrine planktonic diatom assemblages during the early to middle Miocene, was replaced by genera of the family Stephanodiscaceae. This floral turnover has been confirmed in many regions of the world, except eastern Asia where taxonomic data about early and middle Miocene planktonic diatom assemblages have until recently been scarce. Our analysis of Lower and Middle Miocene lacustrine diatomaceous rocks in Japan confirms that species of nonmarine Actinocyclus were important constituents of lake phytoplankton there as well. The appearance of nonmarine Actinocyclus species near the beginning of the Miocene may have resulted from the introduction of euryhaline species into lacustrine environments during a highstand of sea level at that time. Similarly, it is possible that species of Stephanodiscaceae evolved from marine thalassiosiroid ancestors that invaded high latitude lacustrine environments during multiple Paleogene highstands, resulting in a polyphyletic origin of the family. The turnover from nonmarine Actinocyclus to Stephanodiscaceae genera near the middle/late Miocene boundary may be linked to a contemporaneous increase in silica concentrations in lakes caused by active volcanism, increased weathering of silicate rocks due to orogeny, and the expansion of C4 grasslands. This turnover may also have been influenced by enhanced seasonal environmental changes in the euphotic zone caused by the initiation of monsoon conditions and a worldwide increase in meridional temperature gradients during the late Miocene. Morphological characteristics of Stephanodiscaceae genera, such as strutted processes and small size, suggest their species were better adapted to seasonal environmental changes than nonmarine species of Actinocyclus because of their superiority in floating and drifting capabilities and possibly metabolism, intrinsic growth rate, and reproductivity. As climates deteriorated during the late Miocene, Stephanodiscaceae species may have spread from high latitudes to temperate lakes where they diversified, ultimately displacing Actinocyclus.