Summary Biological monitoring programmes are increasingly relying upon large volumes of citizen‐science data to improve the scope and spatial coverage of information, challenging the scientific community to develop design and model‐based approaches to improve inference. Recent statistical models in ecology have been developed to accommodate false‐negative errors, although current work points to false‐positive errors as equally important sources of bias. This is of particular concern for the success of any monitoring programme given that rates as small as 3% could lead to the overestimation of the occurrence of rare events by as much as 50%, and even small false‐positive rates can severely bias estimates of occurrence dynamics. We present an integrated, computationally efficient Bayesian hierarchical model to correct for false‐positive and false‐negative errors in detection/non‐detection data. Our model combines independent, auxiliary data sources with field observations to improve the estimation of false‐positive rates, when a subset of field observations cannot be validated a posteriori or assumed as perfect. We evaluated the performance of the model across a range of occurrence rates, false‐positive and false‐negative errors, and quantity of auxiliary data. The model performed well under all simulated scenarios, and we were able to identify critical auxiliary data characteristics which resulted in improved inference. We applied our false‐positive model to a large‐scale, citizen‐science monitoring programme for anurans in the north‐eastern United States, using auxiliary data from an experiment designed to estimate false‐positive error rates. Not correcting for false‐positive rates resulted in biased estimates of occupancy in 4 of the 10 anuran species we analysed, leading to an overestimation of the average number of occupied survey routes by as much as 70%. The framework we present for data collection and analysis is able to efficiently provide reliable inference for occurrence patterns using data from a citizen‐science monitoring programme. However, our approach is applicable to data generated by any type of research and monitoring programme, independent of skill level or scale, when effort is placed on obtaining auxiliary information on false‐positive rates.
A common goal in ecology and wildlife management is to determine the causes of variation in population dynamics over long periods of time and across large spatial scales. Many assumptions must nevertheless be overcome to make appropriate inference about spatio-temporal variation in population dynamics, such as autocorrelation among data points, excess zeros, and observation error in count data. To address these issues, many scientists and statisticians have recommended the use of Bayesian hierarchical models. Unfortunately, hierarchical statistical models remain somewhat difficult to use because of the necessary quantitative background needed to implement them, or because of the computational demands of using Markov Chain Monte Carlo algorithms to estimate parameters. Fortunately, new tools have recently been developed that make it more feasible for wildlife biologists to fit sophisticated hierarchical Bayesian models (i.e., Integrated Nested Laplace Approximation, ‘INLA’). We present a case study using two important game species in North America, the lesser and greater scaup, to demonstrate how INLA can be used to estimate the parameters in a hierarchical model that decouples observation error from process variation, and accounts for unknown sources of excess zeros as well as spatial and temporal dependence in the data. Ultimately, our goal was to make unbiased inference about spatial variation in population trends over time.
Understanding movement behavior and identifying areas of landscape connectivity is critical for the conservation of many species. However, collecting fine-scale movement data can be prohibitively time consuming and costly, especially for rare or endangered species, whereas existing data sets may provide the best available information on animal movement. Contemporary movement models may not be an option for modeling existing data due to low temporal resolution and large or unusual error structures, but inference can still be obtained using a functional movement modeling approach. We use a functional movement model to perform a population-level analysis of telemetry data collected during the reintroduction of Canada lynx to Colorado. Little is known about southern lynx populations compared to those in Canada and Alaska, and inference is often limited to a few individuals due to their low densities. Our analysis of a population of Canada lynx fills significant gaps in the knowledge of Canada lynx behavior at the southern edge of its historical range. We analyzed functions of individuallevel movement paths, such as speed, residence time, and tortuosity, and identified a region of connectivity that extended north from the San Juan Mountains, along the continental divide, and terminated in Wyoming at the northern edge of the Southern Rocky Mountains. Individuals were able to traverse large distances across non-boreal habitat, including exploratory movements to the Greater Yellowstone area and beyond. We found evidence for an effect of seasonality and breeding status on many of the movement quantities and documented a potential reintroduction effect. Our findings provide the first analysis of Canada lynx movement in Colorado and substantially augment the information available for conservation and management decisions. The functional movement framework can be extended to other species and demonstrates that information on movement behavior can be obtained using existing data sets.
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