Climate change is affecting arctic and subarctic ecosystems, and anadromous fish such as Pacific salmon Oncorhynchus spp. are particularly susceptible due to the physiological challenge of spawning migrations. Predicting how migratory timing will change under Arctic warming scenarios requires an understanding of how environmental factors drive salmon migrations. Multiple mechanisms exist by which environmental conditions may influence migrating salmon, including altered migration cues from the ocean and natal river. We explored relationships between interannual variability and annual migration timing (2003–2014) of Sockeye Salmon O. nerka in a subarctic watershed with environmental conditions at broad, intermediate, and local spatial scales. Low numbers of Sockeye Salmon have returned to this high‐latitude watershed in recent years, and run size has been a dominant influence on the migration duration and the midpoint date of the run. The duration of the migration upriver varied by as much as 25 d across years, and shorter run durations were associated with smaller run sizes. The duration of the migration was also extended with warmer sea surface temperatures in the staging area and lower values of the North Pacific Index. The midpoint date of the total run was earlier when the run size was larger, whereas the midpoint date was delayed during years in which river temperatures warmed earlier in the season. Documenting factors related to the migration of Sockeye Salmon near the northern limit of their range provides insights into the determinants of salmon migrations and suggests processes that could be important for determining future changes in arctic and subarctic ecosystems. Received October 24, 2016; accepted March 2, 2017 Published online June 8, 2017

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The physiological challenge for anadromous fish to migrate upriver is influenced by river temperature, but the impacts of river temperature can be difficult to predict due to an incomplete understanding of how temperature influences migration costs, especially in high‐latitude (>60°N) ecosystems. To assess temperature influences on migrating Pacific salmon Oncorhynchus spp., we measured heat shock protein 70 (HSP70), as an indicator of cellular stress, and energy content of Sockeye Salmon Oncorhynchus nerka throughout their upriver migration in the Pilgrim River, Alaska. Although HSP70 was elevated as fish moved to the spawning grounds and was higher in fish with low energy content, HSP70 did not increase with warmer river temperatures. We verified in an experiment that HSP70 abundance in Sockeye Salmon does respond to temperatures above 20.5°C. Over the 4 years of sampling, energy content decreased at similar rates as Sockeye Salmon moved upstream. We expected Sockeye Salmon energy levels would be lower when migrating in warmer river temperatures; however, we found higher energy levels occurred with higher temperatures in the Pilgrim River. We hypothesize that the relationship between temperature and energy content is due to river temperatures often occurring below optimal temperatures for migration. Lower temperatures could be energetically costly or reduce migration rates, both of which would result in lower energy content with cooler temperature. Understanding interactions between environmental drivers and physiological responses will help managers anticipate future changes for Sockeye Salmon at the northern edge of their distribution.