Fisheries are highly complex social-ecological systems that often face ‘wicked’ problems from unsustainable resource management to climate change. Addressing these challenges requires transdisciplinary approaches that integrate perspectives across scientific disciplines and knowledge systems. Despite widespread calls for transdisciplinary fisheries research (TFR), there are still limitations in personal and institutional capacity to conduct and support this work to the highest potential. The viewpoints of early career researchers (ECRs) in this field can illuminate challenges and promote systemic change within fisheries research. This paper presents the perspectives of ECRs from across the globe, gathered through a virtual workshop held during the 2021 World Fisheries Congress, on goals, challenges, and future potential for TFR. Big picture goals for TFR were guided by principles of co-production and included (i) integrating transdisciplinary thinking at all stages of the research process, (ii) ensuring that research is inclusive and equitable, (iii) co-creating knowledge that is credible, relevant, actionable, and impactful, and (iv) consistently communicating with partners. Institutional inertia, lack of recognition of the extra time and labour required for TFR, and lack of skill development opportunities were identified as three key barriers in conducting TFR. Several critical actions were identified to help ECRs, established researchers, and institutions reach these goals. We encourage ECRs to form peer-mentorship networks to guide each other along the way. We suggest that established researchers ensure consistent mentorship while also giving space to ECR voices. Actions for institutions include retooling education programs, developing and implementing new metrics of impact, and critically examining individualism and privilege in academia. We suggest that the opportunities and actions identified here, if widely embraced now, can enable research that addresses complex challenges facing fishery systems contributing to a healthier future for fish and humans alike.

With the increasingly imperilled status of shark populations, there is a pressing need to evaluate management solutions. Given the threats posed by fishing, marine reserves (MRs) present a promising option. Ata Whenua (Fiordland) in the South Island of Aotearoa/New Zealand is an ideal location to investigate this phenomenon owing to the presence of several shark species in coastal MRs. One‐hundred and sixty‐seven baited remote underwater video deployments were made in five MRs. A multi‐model inference approach using generalized linear modelling was used to assess the combined effect of the MRs on two trophic groups of coastal sharks. Generalized linear modelling was used to assess the effect of protection on, firstly, the presence of broadnose sevengill sharks (Notorynchus cepedianus), while accounting for variations in environmental variables, and secondly, the combined relative abundance of mesopredatory sharks detected (spiny dogfish, Squalus acanthias; school shark, Galeorhinus galeus; and carpet shark, Cephaloscyllium isabellum). Mesopredators had a higher relative abundance in MRs by a factor of 2.5 and there was a strong significant effect of protection, suggesting that MRs have led to an increase in their abundance or a change in distribution. In contrast, there was no effect of protection detected for sevengill sharks. It is concluded that the relatively small (<40 km2) MRs sampled do not provide conservation benefits for a large, mobile shark, but that they are potentially large enough to offer protection for mesopredatory sharks with smaller home ranges. To be effective for shark conservation, we therefore recommend that MRs need to be appropriately sized for the ranging behaviour of the target species for protection.

Effective management of biodiversity requires regular surveillance of multiple species. Analysis of environmental DNA by metabarcoding (eDNA) holds promise to achieve this relatively easily. However, taxonomic inquiries into eDNA data need suitable molecular reference data, which are often lacking. We evaluate the impact of this reference data void in a case study of fish diversity in the remote fiords of New Zealand. We compared eDNA-derived species identifications against Baited Remote Underwater Video (BRUV) data collected at the same time and locations as the eDNA data. Furthermore, we cross referenced both eDNA and BRUV data against species lists for the same region obtained from literature surveys and the Ocean Biodiversity Information System (OBIS). From all four data sources, we obtained a total of 116 species records (106 ray-finned fishes, 10 cartilaginous fishes; 59 from literature, 44 from eDNA, 25 from BRUV, 25 from OBIS). Concordance of taxonomies between the data sources dissolved with lowering taxonomic levels, most decisively so for eDNA data. BRUV agreed with local biodiversity information much better and fared better in detecting regional biodiversity dissimilarities. We provide evidence that eDNA metabarcoding will remain a powerful but impaired tool for species-level biodiversity management without locally generated reference data.