In eukaryotes and archaea, uridines in various RNAs. The RNA-guided RNA modification system alters the primary sequence and modulates the function of target RNAs that include rRNAs, snRNAs, tRNAs, and perhaps mRNAs (Yu et al. 1998(Yu et al. , 2005Cavaille et al. 2000;King et al. 2003;Omer et al. 2003). In humans it is currently estimated that >200 2Ј-O-methylations and pseudouridylations are introduced into rRNA and other RNAs by this system (Maden 1990;Bachellerie and Cavaille 1998;Ofengand and Fournier 1998;Vitali et al. 2003).There are two large families of modification guide RNAs found in both eukaryotes and archaea: C/D RNAs that guide 2Ј-O-ribose methylation (Kiss-Laszlo et al. 1996;Omer et al. 2000) and H/ACA RNAs that guide pseudouridylation (Balakin et al. 1996; Ganot et al. 1997a,b;Tang et al. 2002). Both families of guide RNAs function in the context of RNA-protein complexes (RNPs) that include the enzyme responsible for modification (Filipowicz and Pogacic 2002;Terns and Terns 2002). The functional organization of modification guide RNPs, including the mechanism by which the enzyme associates with a guide RNA and the roles of the other essential proteins in the complex, is a subject of great interest. In C/D RNPs the 2Ј-O-methyltransferase, fibrillarin, associates with a guide RNA primarily via a bridge formed by the other proteins in the complex, Nop56/58 and L7Ae (or Nop56, Nop58, and p15.5 in eukaryotes).
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