Aquatic macrophytes are often monitored to detect change in ecosystem function and state, as well as assessing the effectiveness of invasive aquatic plant management. This study compares seven methodologies to monitor the distribution and abundances of aquatic macrophytes. Four line transect methodologies and three spatial mapping techniques were employed in parallel over a broad turbidity gradient in two lentic habitats of south-eastern Australia. The methodologies examined included hydroacoustic surveys, on-site digitising, and digitisation of airborne remote sensing imagery. Variation in estimates of macrophyte coverage were observed between methodologies. Consistency in the collection and interpretation of data was greatest for the line transect methodologies and the digitisation of satellite imagery. Duel-frequency identification sonar proved to be an effective novel hydroacoustic technique to monitor macrophyte abundances over broad spatial scales. Single beam sonar transects was also an objective, repeatable and scalable methodology. Videography and on-site handheld PDA mapping were of limited utility due to restrictions imposed by turbidity. The utility of sidescan sonar could be improved when used in conjunction with on-site handheld PDA mapping. This study outlines important considerations when selecting a methodology to monitor macrophyte distribution and abundance. Results indicate that no one specific method can be employed across all macrophyte monitoring studies. The method or combination of methods employed during macrophyte monitoring studies is dependent upon the study objectives, budget and environmental conditions of the study site.

Summary Globally, the extraction and diversion of water from river systems has had substantial impacts on aquatic ecosystem health and ecological processes. One such impact is the entrainment of fish at pump offtakes that can result in vast quantities of fish being permanently removed from rivers. Exclusion screens to prevent fish entrainment at pump offtakes are therefore an important management consideration. In this study, impingement and subsequent injury and mortality of a juvenile freshwater perciform, Golden Perch (Macquaria ambigua), was assessed in the laboratory using a simulated fish exclusion screen under a range of velocities and impingement durations. A 2 mm wedge‐wire screen eliminated the entrainment of 44‐day‐old Golden Perch that were exposed to approach velocities between 0.05 and 0.3 m/s. However, impingement rates of Golden Perch increased significantly with increased approach velocities and rates of injury and mortality increased with impingement duration. Results from this study indicate the primary mechanisms to reduce fish loss at pump offtakes are to design pump offtakes, fitted with fish exclusion screens, which limit approach velocities or impingement duration. Further studies are required to examine a range of species with varying swimming ability at early life‐history stages. Such data will contribute to the growing body of knowledge that supports adaptive management plans to prevent fish loss at water offtake pumps.