Abstract-The exact performance analysis of large-scale software systems with discrete-state approaches is difficult because of the well-known problem of state-space explosion. This paper considers this problem with regard to the stochastic process algebra PEPA, presenting a deterministic approximation to the underlying Markov chain model based on ordinary differential equations. The accuracy of the approximation is assessed by means of a substantial case study of a distributed multi-threaded application.
Abstract. We present an algorithm to compute exact aggregations of a class of systems of ordinary differential equations (ODEs). Our approach consists in an extension of Paige and Tarjan's seminal solution to the coarsest refinement problem by encoding an ODE system into a suitable discrete-state representation. In particular, we consider a simple extension of the syntax of elementary chemical reaction networks because i) it can express ODEs with derivatives given by polynomials of degree at most two, which are relevant in many applications in natural sciences and engineering; and ii) we can build on two recently introduced bisimulations, which yield two complementary notions of ODE lumping. Our algorithm computes the largest bisimulations in O(r · s · log s) time, where r is the number of monomials and s is the number of variables in the ODEs. Numerical experiments on real-world models from biochemistry, electrical engineering, and structural mechanics show that our prototype is able to handle ODEs with millions of variables and monomials, providing significant model reductions.
In chemical reaction networks (CRNs) with stochastic semantics based on continuous-time Markov chains (CTMCs), the typically large populations of species cause combinatorially large state spaces. This makes the analysis very difficult in practice and represents the major bottleneck for the applicability of minimization techniques based, for instance, on lumpability. In this paper we present syntactic Markovian bisimulation (SMB), a notion of bisimulation developed in the Larsen-Skou style of probabilistic bisimulation, defined over the structure of a CRN rather than over its underlying CTMC. SMB identifies a lumpable partition of the CTMC state space a priori, in the sense that it is an equivalence relation over species implying that two CTMC states are lumpable when they are invariant with respect to the total population of species within the same equivalence class. We develop an efficient partition-refinement algorithm which computes the largest SMB of a CRN in polynomial time in the number of species and reactions. We also provide an algorithm for obtaining a quotient network from an SMB that induces the lumped CTMC directly, thus avoiding the generation of the state space of the original CRN altogether. In practice, we show that SMB allows significant reductions in a number of models from the literature. Finally, we study SMB with respect to the deterministic semantics of CRNs based on ordinary differential equations (ODEs), where each equation gives the time-course evolution of the concentration of a species. SMB implies forward CRN bisimulation, a recently developed behavioral notion of equivalence for the ODE semantics, in an analogous sense: it yields a smaller ODE system that keeps track of the sums of the solutions for equivalent species.
International audienceWe study the problem of making forecasts about the future availability of bicycles in stations of a bike-sharing system (BSS). This is relevant in order to make recommendations guaranteeing that the probability that a user will be able to make a journey is sufficiently high. To do this we use probabilistic predictions obtained from a queuing theoretical time-inhomogeneous model of a BSS. The model is parametrized and successfully validated using historical data from the Vélib ' BSS of the City of Paris. We develop a critique of the standard root-mean-square-error (RMSE), commonly adopted in the bike-sharing research as an index of the prediction accuracy, because it does not account for the stochasticity inherent in the real system. Instead we introduce a new metric based on scoring rules. We evaluate the average score of our model against classical predictors used in the literature. We show that these are outperformed by our model for prediction horizons of up to a few hours. We also discuss that, in general, measuring the current number of available bikes is only relevant for prediction horizons of up to few hours
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