Composting is the controlled conversion of degradable organic products and wastes into stable products with the aid of microorganisms. Composting is a long-used technology, though it has some shortcomings that have reduced its extensive usage and efficiency. The shortcomings include pathogen detection, low nutrient status, long duration of composting, long mineralization duration, and odor production. These challenges have publicized the use of chemical fertilizers produced through the Haber–Bosch process as an alternative to compost over time. Chemical fertilizers make nutrients readily available to plants, but their disadvantages outweigh their advantages. For example, chemical fertilizers contribute to greenhouse effects, environmental pollution, death of soil organisms and marine inhabitants, ozone layer depletion, and human diseases. These have resulted in farmers reverting to the application of composts as a means of restoring soil fertility. Composting is a fundamental process in agriculture and helps in the recycling of farm wastes. The long duration of composting is a challenge; this is due to the presence of materials that take a longer time to compost, especially during co-composting. This review discusses the proper management of wastes through composting, different composting methods, the factors affecting composting, long-duration composting, the mechanism behind it, the present trends in composting and prospects. The extraction of mono-fertilizers from compost, development of strips to test for the availability of heavy metals and pathogens as well as an odor-trapping technique can go a long way in enhancing composting techniques. The addition of activators to raw materials can help to improve the nutritional quality of compost. This review further recommends that degradable organic material in which composts slowly should be assessed for their ability to mineralize slowly, which could make them advantageous to perennial or biennial crops. Viricides, fungicides, anti-nematodes, and anti-bacterial of plant or organic sources could as well be added to improve compost quality. The enhancement of composting duration will also be useful.

Over the years, synthetic pesticides like herbicides, algicides, miticides, bactericides, fumigants, termiticides, repellents, insecticides, molluscicides, nematicides, and pheromones have been used to improve crop yield. When pesticides are used, the over-application and excess discharge into water bodies during rainfall often lead to death of fish and other aquatic life. Even when the fishes still live, their consumption by humans may lead to the biomagnification of chemicals in the body system and can cause deadly diseases, such as cancer, kidney diseases, diabetes, liver dysfunction, eczema, neurological destruction, cardiovascular diseases, and so on. Equally, synthetic pesticides harm the soil texture, soil microbes, animals, and plants. The dangers associated with the use of synthetic pesticides have necessitated the need for alternative use of organic pesticides (biopesticides), which are cheaper, environment friendly, and sustainable. Biopesticides can be sourced from microbes (e.g., metabolites), plants (e.g., from their exudates, essential oil, and extracts from bark, root, and leaves), and nanoparticles of biological origin (e.g., silver and gold nanoparticles). Unlike synthetic pesticides, microbial pesticides are specific in action, can be easily sourced without the need for expensive chemicals, and are environmentally sustainable without residual effects. Phytopesticides have myriad of phytochemical compounds that make them exhibit various mechanisms of action, likewise, they are not associated with the release of greenhouse gases and are of lesser risks to human health compared to the available synthetic pesticides. Nanobiopesticides have higher pesticidal activity, targeted or controlled release with top-notch biocompatibility and biodegradability. In this review, we examined the different types of pesticides, the merits, and demerits of synthetic pesticides and biopesticides, but more importantly, we x-rayed appropriate and sustainable approaches to improve the acceptability and commercial usage of microbial pesticides, phytopesticides, and nanobiopesticides for plant nutrition, crop protection/yield, animal/human health promotion, and their possible incorporation into the integrated pest management system.

Agriculture is faced with many challenges including loss of biodiversity, chemical contamination of soils, and plant pests and diseases, all of which can directly compromise plant productivity and health. In addition, inadequate agricultural practices which characterize conventional farming play a contributory role in the disruption of the plant-microbe and soil-plant interactions. This review discusses the role of organic amendments in the restoration of soil health and plant disease management. While the use of organic amendments in agriculture is not new, there is a lack of knowledge regarding its safe and proper deployment. Hence, a biorational approach of organic amendment use to achieve sustainable agricultural practices entails the deployment of botanicals, microbial pesticides, and organic minerals as organic amendments for attaining plant fitness and disease suppression. Here, the focus is on the rhizosphere microbial communities. The role of organic amendments in stimulating beneficial microbe quorum formation related to the host-plant-pathogen interactions, and its role in facilitating induced systemic resistance and systemic-acquired resistance against diseases was evaluated. Organic amendments serve as soil conditioners, and their mechanism of action needs to be further elaborated to ensure food safety.

The growing rate of urbanization and industrialization has led to an increase in several types of pollution caused by the release of toxic chemicals to the environment. This is usually perpetuated by the manufacturing industry (e.g. detergent and dye), agricultural sectors (e.g. fertilizers and pesticides), mining industry (e.g. cyanide and sulphuric acid) and construction companies (e.g. cement and metals). These pollutants have adverse effects on the health of plants, animals, and humans. They also lead to the destruction of the microbial population in both aquatic and the terrestrial regions, and hence, have necessitated the need for remediation. Although different remediation methods, such as the physical and chemical methods, have been adopted for years, however, the drawbacks and challenges associated with them have promoted the use of an alternative which is bioremediation. Bioremediation involves using biological agents such as plants and microbes to remove or lessen the effects of environmental pollutants. Of the two, microbes are more utilized primarily because of their rapid growth and ability to be easily manipulated, thus enhancing their function as agents of bioremediation. Different groups of bacteria, fungi and algae have been employed to clean up various environmental pollutants. This review discusses the types, mechanisms, and factors affecting microbial bioremediation. It also recommends possible steps that could be taken to promote the use of microbes as bioremediation agents.

The diversity of plant-associated microbes is enormous and complex. These microbiomes are structured and form complex interconnected microbial networks that are important in plant health and ecosystem functioning. Understanding the composition of the microbiome and their core function is important in unraveling their networking strategies and their potential influence on plant performance. The network is altered by the host plant species, which in turn influence the microbial interaction dynamics and coevolution. We discuss the plant microbiome and the complex interplay among microbes and between their host plants. We provide an overview of how plant performance is influenced by the microbiome diversity and function.