The ability of chromosomes to move across the nuclear space is essential for the reorganization of the nucleus that takes place in early meiotic prophase. Chromosome dynamics of prophase I have been studied in budding and fission yeasts, but little is known about this process in higher eukaryotes, where genomes and chromosomes are much larger and meiosis takes a longer time to complete. This knowledge gap has been mainly caused by difficulties in culturing isolated live meiocytes of multicellular eukaryotes. To study the nuclear dynamics during meiotic prophase in maize, we established a system to observe live meiocytes inside intact anthers. We found that maize chromosomes exhibited extremely dynamic and complex motility in zygonema and pachynema. The movement patterns differed dramatically between the two stages. Chromosome movements included rotations of the entire chromatin and movements of individual chromosome segments, which were mostly telomere-led. Chromosome motility was coincident with dynamic deformations of the nuclear envelope. Both, chromosome and nuclear envelope motility depended on actin microfilaments as well as tubulin. The complexity of the nuclear movements implies that several different mechanisms affect chromosome motility in early meiotic prophase in maize. We propose that the vigorous nuclear motility provides a mechanism for homologous loci to find each other during zygonema.chromosome dynamics ͉ cytogenetics ͉ meiosis ͉ cell biology I n early meiotic prophase, the nucleus undergoes a major spatial reorganization, which includes a general repositioning of chromatin and juxtaposition of homologous chromosomes (1). In many species, including maize, the nucleolus is located in the center of the nucleus during leptonema, and at the onset of zygonema, moves to a peripheral position (1, 2). Concurrently with the nucleus migration, all chromosome ends attach to the nuclear envelope (NE) and cluster on a single site forming the ''telomere bouquet'' (3, 4), which has been observed in most plants, animals, and fungi, including budding and fission yeasts, mouse, and maize. The telomeres remain clustered throughout zygonema. When the telomeres are clustered, centromeres are oriented in the opposite direction than the telomeres, resulting in a telomere-centromere polarization of the meiocyte nucleus. The presence of the bouquet coincides with pairing of homologous chromosomes (3, 5). In plants, mammals, and fungi, chromosome pairing depends upon the progression of meiotic recombination (5-7). However, a recombination-driven homology recognition mechanism can only operate across a relatively short distance, probably Ϸ1.2 m (6). In large-genome species, such as maize, where the zygotene nucleus is Ϸ20 m in diameter, this mechanism may not be sufficient to reach across the chromatin mass in the nucleus, even when the chromosomes are brought together by the bouquet (6). These constraints suggest that homologous chromosome segments must first be positioned close to each other, before the homology search...

SummaryPhytochromes are the primary red/far-red photoreceptors of higher plants, mediating numerous developmental processes throughout the life cycle, from germination to flowering. In seed plants, phytochromes are encoded by a small gene family with each member performing both distinct and redundant roles in mediating physiological responses to light cues. Studies in both eudicot and monocot species have defined a central role for phytochrome B in mediating responses to light in the control of several agronomically important traits, including plant height, transitions to flowering and axillary branch meristem development. Here we characterize Mutator-induced alleles of PhyB1 and a naturally occurring deletion allele of PhyB2 in Zea mays (maize). Using single and double mutants, we show that the highly similar PhyB1 and PhyB2 genes encode proteins with both overlapping and non-redundant functions that control seedling and mature plant traits. PHYB1 and PHYB2 regulate elongation of sheath and stem tissues of mature plants and contribute to the lightmediated regulation of PhyA and Cab gene transcripts. However, PHYB1 and not PHYB2 contributes significantly to the inhibition of mesocotyl elongation under red light, whereas PHYB2 and to a lesser extent PHYB1 mediate the photoperiod-dependent floral transition. This sub functionalization of PHYB activities in maize has probably occurred since the tetraploidization of maize, and may contribute to flowering time variation in modern-day varieties.

Switchgrass (Panicum virgatum L.), a native perennial dominant of the prairies of North America, has been targeted as a model herbaceous species for biofeedstock development. A fl owcytometric survey of a core set of 11 primarily upland polyploid switchgrass accessions indicated that there was considerable variation in genome size within each accession, particularly at the octoploid (2n = 8X = 72 chromosome) ploidy level. Highly variable chromosome counts in mitotic cell preparations indicated that aneuploidy was more common in octoploids (86.3%) than tetraploids (23.2%). Furthermore, the incidence of hyper-versus hypoaneuploidy is equivalent in tetraploids. This is clearly not the case in octoploids, where close to 90% of the aneuploid counts are lower than the euploid number. Cytogenetic investigation using fl uorescent in situ hybridization (FISH) revealed an unexpected degree of variation in chromosome structure underlying the apparent genomic instability of this species. These results indicate that rapid advances in the breeding of polyploid biofuel feedstocks, based on the molecular-genetic dissection of biomass characteristics and yield, will be predicated on the continual improvement of our understanding of the cytogenetics of these species. T HE GENETIC STRUCTURE of an organism has profound eff ects on all aspects of its basic biology. Th e manner in which its genes are distributed, whether in few or many chromosomes, the numbers of whole sets of chromosomes (ploidy levels) present, and the presence or absence of individual copies of chromosomes, all contribute to its phenotype. Ploidy diff erences among individuals in a population will determine mating patterns and gene fl ow, aff ecting the distribution of genetic variation both within and among individuals. In natural populations, the resulting phenotypic variation is the foundation for ecotype formation, and, ultimately, over time, can lead to speciation. In a breeding program, it is the raw material for cultivar development and improvement of the crop. Th us, a thorough knowledge of the extent of any form of genome-size variation in a study organism is a critical fi rst step for any type of genetics or genomics research program.Switchgrass (Panicum virgatum L.) has been the subject of intensive and extensive agronomic and breeding research for biofeedstock production since it was

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To begin the study of phytochrome signaling in maize, we have cloned and characterized the phytochrome gene family from the inbred B73. Through DNA gel blot analysis of maize genomic DNA and BAC library screens, we show that the PhyA, PhyB, and PhyC genes are each duplicated once in the genome of maize. Each gene pair was positioned to homeologous regions of the genome using recombinant inbred mapping populations. These results strongly suggest that the duplication of the phytochrome gene family in maize arose as a consequence of an ancient tetraploidization in the maize ancestral lineage. Furthermore, sequencing of Phy genes directly from BAC clones indicates that there are six functional phytochrome genes in maize. Through Northern gel blot analysis and a semiquantitative reverse transcriptase polymerase chain reaction assay, we determined that all six phytochrome genes are transcribed in several seedling tissues. However, expression from PhyA1, PhyB1, and PhyC1 predominate in all seedling tissues examined. Dark-grown seedlings express higher levels of PhyA and PhyB than do light-grown plants but PhyC genes are expressed at similar levels under light and dark growth conditions. These results are discussed in relation to phytochrome gene regulation in model eudicots and monocots and in light of current genome sequencing efforts in maize.