Renal cell carcinoma (RCC) represents around 2-3% of all malignancies diagnosed in adult patients. Most frequent (around 70-80% cases) and the most aggressive subtype is clear cell RCC (ccRCC). Mutations in VHL (von Hippel Lindau) gene, characteristic for this cancer type, lead to altered activity of the trimeric VBC (pVHL-elongin B-C) complex and consequently to HIF-1α stabilization. In this study, we present results of exhaustive investigation of HIF-1α alternative transcript variants abundance in A498, CAKI-1, and 786-O ccRCC cell lines. We proved the existence of truncated HIF-1α protein form (HIF1AΔ-6) in A498 and HIF1A gene rearrangements in 786-O cell lines. Subsequently, we found that HIF1AΔ2-6 was more stable than the full-length HIF-1α. Moreover, the shorter HIF-1α was insensitive for hypoxia and was overaccumulated after proteasome inhibitor treatment indicative of potential diversified roles of full-length and truncated HIF-1α forms in the cell. We also showed that A498, CAKI-1, and 786-O exhibit differential expression of various regulatory genes involved in the control of metabolic processes, that is, glucose and lipid metabolism, and encoding subunits of such machineries like SWI/SNF chromatin remodeling complex. Furthermore, these cell lines exhibited differential responses to axitinib, everolimus, and sunitinib-anticancer drugs-in normoxia and hypoxia as well as various alterations in metabolism-related Abbreviations: 2-OG, 2-oxoglutarate; ALDO, aldolase; ARD1, arrest-defective 1 acetyltransferase; ARNT, aryl hydrocarbon receptor nuclear translocator; bHLH, basic helix-loop-helix; ccRCC, clear cell renal cell carcinoma; CPT1A, carnitine palmitoyltransferase 1A; CUL2, cullin 2; DFO, deferoxamine; DMOG, dimethyloxaloglycine; ENO, enolase; EPAS1, endothelial PAS domain protein 1; EPO, erythropoietin; FBP1, fructose-1,6-bisphosphatase 1; FIH-1, factor inhibiting HIF-1; G6P, glucose-6-phosphatase; GAPDH, glyceraldehyde-3-phosphate dehydrogenase; HIF1A, hypoxia inducible factor 1A; HK, hexokinase; HPH, HIF prolyl hydroxylase; HRE, hypoxia-responsive element; iNOS, inducible nitric oxide synthase; LDHA, lactate dehydrogenase A; PAS, Per-ARNT-Sim; PHD, prolyl hydroxylase; PLIN2, perilipin 2; PKM2, pyruvate kinase M2; RBX-1, Ring box 1; RCC, renal cell carcinoma; SMARCB1 (INI1), SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1; TCEB1, transcription elongation factor B (SIII); VHL, von Hippel-Lindau.