We compute the primary charge separation step in the homodimeric reaction center (RC) of Heliobacterium modesticaldum from first principles. Using time-dependent density functional theory with the optimally tuned range-separated hybrid functional ωPBE, we calculate the excitations of a system comprising the special pair, the adjacent accessory bacteriochlorophylls, and the most relevant parts of the surrounding protein environment. The structure of the excitation spectrum can be rationalized from coupling of the individual bacteriochlorophyll pigments similar to molecular J- and H-aggregates. We find excited states corresponding to forward-charge transfer along the individual branches of the RC of H. modesticaldum. In the spectrum, these are located at an energy between the coupled Q y and Q x transitions. With ab initio Born–Oppenheimer molecular dynamics simulations, we reveal the influence of thermal vibrations on the excited states. The results show that the energy gap between the coupled Q y and the forward-charge transfer excitations is ∼0.4 eV, which we consider to conflict with the concept of a direct transfer mechanism. Our calculations, however, reveal a certain spectral overlap of the forward-charge transfer and the coupled Q x excitations. The reliability and robustness of the results are demonstrated by several numerical tests.
Range-separated hybrid approximations to the exchange–correlation density functional mix exact and semi-local exchange in a position-dependent manner. In their conventional form, the range separation is controlled by a constant parameter. Turning this constant into a density functional leads to a locally space-dependent range-separation function and thus a more powerful and flexible range-separation approach. In this work, we explore the self-consistent implementation of a local range-separated hybrid, taking into account a one-electron self-interaction correction and the behavior under uniform density scaling. We discuss different forms of the local range-separation function that depend on the electron density, its gradient, and the kinetic energy density. For test sets of atomization energies, reaction barrier heights, and total energies of atoms, we demonstrate that our best model is a clear improvement over common global range-separated hybrid functionals and can compete with density functionals that contain multiple empirical parameters. Promising results for equilibrium bond lengths, harmonic vibrational frequencies, and vertical ionization potentials further underline the potential and flexibility of our approach.
We apply the formally exact quantum power functional framework (J. Chem. Phys. 2015, 143, 174108) to a one-dimensional Hooke’s helium model atom. The physical dynamics are described on the one-body level beyond the density-based adiabatic approximation. We show that gradients of both the microscopic velocity and acceleration field are required to correctly describe the effects due to interparticle interactions. We validate the proposed analytical forms of the superadiabatic force and transport contributions by comparison to one-body data from exact numerical solution of the Schrödinger equation. Superadiabatic contributions beyond the adiabatic approximation are important in the dynamics and they include effective dissipation.
The homodimeric reaction center of heliobacteria retains features of the ancestral reaction center and can thus provide insights into the evolution of photosynthesis. Primary charge separation is expected to proceed in a two-step mechanism along either of the two reaction center branches. We reveal the first charge-separation step from first-principles calculations based on time-dependent density functional theory with an optimally tuned rangeseparated hybrid and ab initio Born−Oppenheimer molecular dynamics: the electron is most likely localized on the electron transfer cofactor 3 (EC3, OH-chlorophyll a), and the hole on the adjacent EC2. Including substantial parts of the surrounding protein environment into the calculations shows that a distinct structural mechanism is decisive for the relative energetic positioning of the electronic excitations: specific charged amino acids in the vicinity of EC3 lower the energy of charge-transfer excitations and thus facilitate efficient charge separation. These results are discussed considering recent experimental insights.
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