2005. Molecular phylogenetic analysis of the white-crowned forktail Enicurus leschenaulti in Borneo. Á/ J. Avian Biol. 36: 96 Á/101.Comparison of 1017 nucleotides of mitochondrial ND2 and ND3 DNA sequences of 26 individuals of white-crowned forktail Enicurus leschenaulti from SE Asia revealed multiple evolutionary lineages within Borneo. Montane birds were genetically homogeneous across localities, but diverged by more than 4.3% from all other samples. Lowland birds formed two distinct clades, one consisting of individuals from northern Borneo, and the other including individuals from western Borneo, as well as Sumatra and Malaya. Relationships among the subspecies were not well resolved. These findings indicate another example of montane and north Bornean endemicity, support the separation of the montane and lowland species, and define areas of conservation interest.
Aim: A current model of rain forest population diversification in Sundaland specifies east-west vicariance into refugia during the early Pleistocene. In some taxa, this division was followed by dispersal and apparent secondary contact on Borneo in the late Pleistocene. To investigate genetic, morphological, spatial and temporal characteristics of the model, we compared genomic population and plumage variation among four bird species with east-west mtDNA and plumage structure. Location: Borneo and western Sundaland (Sumatra and the Malay Peninsula). Methods: We quantified plumage patterns among populations of two muscicapids (Copsychus saularis and Kittacincla malabarica) and two timaliids (Mixornis gularis and Trichastoma malaccense), and compared them with population genetic patterns determined from (1) SNPs produced by RAD-Seq and (2) previously sequenced mtDNA. Results: All four species exhibit east-west variation in morphological and some genetic characters, but patterns are idiosyncratic. Copsychus saularis' mtDNA and plumage change gradually across Borneo, but RAD-Seq comparisons indicate no population structure. In K. malabarica, all three characteristics change abruptly and concurrently on Borneo. In M. gularis, the main east-west break occurs between Borneo and western Sundaland, with marginal mtDNA, plumage and RAD-Seq structure on Borneo. T. malaccense exhibits two distinct mtDNA and genomic transitions, an early Pleistocene break between western Sundaland and Borneo, and a Pliocene break between the north-east and the rest of Borneo. Despite this deep genetic division, its plumage changes clinally across Borneo.Main conclusions: MtDNA, plumage and RAD-Seq patterns may vary depending on such factors as pre-Pleistocene distribution, habitat requirements and dispersal propensity, differential introgression among the three character types, selection on plumage and phylogenetic relationships.
The phylogeny of spiderhunters (Nectariniidae: Arachnothera) was reconstructed by comparing mitochondrial and nuclear DNA sequences of all currently recognized species and with broad geographic sampling of two particularly variable species complexes, the Little Spiderhunter (Arachnothera longirostra) and the streaky spiderhunters (A. modesta and A. affinis). It appears to be a relatively old group, whose diversification was not caused by recent sea-level changes. However, the modern, highly sympatric distribution of the large species in the Sunda lowlands was probably a result of dispersal via recent land bridges. Within the highly variable A. longirostra group, there are substantially diverged taxa in the Philippines that should be considered different species. Within the A. affinis-modesta complex, there are three distinct species and a closely related fourth, which describe a clear allopatric distribution: A. affinis in Java, A. modesta in the rest of the Sunda lowlands (except Sabah), A. magna in the Malayan highlands and mainland Southeast Asia, and A. everetti in the Bornean highlands and Sabah. Depending on whether mitochondrial or nuclear genes were compared, monophyly of the genus was disrupted by a single outgroup sunbird (Hypogramma hypogrammicum) or by all outgroup sunbirds included in the study. The discrepancy between nuclear and mitochondrial results is probably a case of deep coalescence and will require additional markers for resolution.
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