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A Brain-Computer Interface (BCI) is a system used to communicate with an external world through the brain activity. The brain activity is measured by electroencephalography (EEG) signal and then processed by a BCI system. EEG source reconstruction could be a way to improve the accuracy of EEG classification in EEG based brain-computer interface (BCI). The source localization of the human brain activities can be an important resource for the recognition of the cognitive state, medical disorders, and a better understanding of the brain in general. In this study, we have compared 51 mother wavelets taken from 7 different wavelet families, which are applied to a Stationary Wavelet Transform (SWT) decomposition of an EEG signal. This process includes Haar, Symlets, Daubechies, Coiflets, Discrete Meyer, Biorthogonal, and reverse Biorthogonal wavelet families in extracting five different brainwave subbands for source localization. For this process, we used the Independent Component Analysis (ICA) for feature extraction followed by the Boundary Element Model (BEM) and the Equivalent Current Dipole (ECD) for the forward and inverse problem solutions. The evaluation results in investigating the optimal mother wavelet for source localization eventually identified the sym20 mother wavelet as the best choice followed by bior6.8 and coif5.

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