The three catalytic sites of the F(O)F(1) ATP synthase interact through a cooperative mechanism that is required for the promotion of catalysis. Replacement of the conserved alpha subunit Arg-376 in the Escherichia coli F(1) catalytic site with Ala or Lys resulted in turnover rates of ATP hydrolysis that were 2 x 10(3)-fold lower than that of the wild type. Mutant enzymes catalyzed hydrolysis at a single site with kinetics similar to that of the wild type; however, addition of excess ATP did not chase bound ATP, ADP, or Pi from the catalytic site, indicating that binding of ATP to the second and third sites failed to promote release of products from the first site. Direct monitoring of nucleotide binding in the alphaR376A and alphaR376K mutant F(1) by a tryptophan in place of betaTyr-331 (Weber et al. (1993) J. Biol. Chem. 268, 20126-20133) showed that the catalytic sites of the mutant enzymes, like the wild type, have different affinities and therefore, are structurally asymmetric. These results indicate that alphaArg-376, which is close to the beta- or gamma-phosphate group of bound ADP or ATP, respectively, does not make a significant contribution to the catalytic reaction, but coordination of the arginine to nucleotide filling the low-affinity sites is essential for promotion of rotational catalysis to steady-state turnover.

The reduction of a redox-active ligand is shown to drive reversible switching of a Cu(I) [2]pseudorotaxane ([2]PR(+)) into the reduced [3]pseudorotaxane ([3]PR(+)) by a bimolecular mechanism. The unreduced pseudorotaxanes [2]PR(+) and [3]PR(2+) are initially self-assembled from the binucleating ligand, 3,6-bis(5-methyl-2-pyridine)-1,2,4,5-tetrazine (Me(2)BPTZ), and a preformed copper-macrocycle moiety (Cu-M(+)) based on 1,10-phenanthroline. X-ray crystallography revealed a syn geometry of the [3]PR(2+). The UV-vis-NIR spectra show low-energy metal-to-ligand charge-transfer transitions that red shift from 808 nm for [2]PR(+) to 1088 nm for [3]PR(2+). Quantitative analysis of the UV-vis-NIR titration shows the stepwise formation constants to be K(1) = 8.9 x 10(8) M(-1) and K(2) = 3.1 x 10(6) M(-1), indicative of negative cooperativity. The cyclic voltammetry (CV) and coulometry of Me(2)BPTZ, [2]PR(+), and [3]PR(2+) shows the one-electron reductions at E(1/2) = -0.96, -0.65, and -0.285 V, respectively, to be stabilized in a stepwise manner by each Cu(+) ion. CVs of [2]PR(+) show changes with scan rate consistent with an EC mechanism of supramolecular disproportionation after reduction: [2]PR(0) + [2]PR(+) = [3]PR(+) + Me(2)BPTZ(0) (K(D)*, k(d)). UV-vis-NIR spectroelectrochemistry was used to confirm the 1:1 product stoichiometry for [3]PR(+):Me(2)BPTZ. The driving force (DeltaG(D)* = -5.1 kcal mol(-1)) for the reaction is based on the enhanced stability of the reduced [3]PR(+) over reduced [2]PR(0) by 365 mV (8.4 kcal mol(-1)). Digital simulations of the CVs are consistent with a bimolecular pathway (k(d) = 12 000 s(-1) M(-1)). Confirmation of the mechanism provides a basis to extend this new switching modality to molecular machines.