Between 4500 and 3500 years ago, partially intrusive Neolithic populations in the riverine basins of mainland Southeast Asia began to form mounded settlements and to develop economies based on rice cultivation, fishing, hunting, and the domestication of animals, especially pigs and dogs. A number of these sites have been excavated in recent years and they are often large mounds that can attain several meters in depth, comprising successive layers of alluvial soil brought in periodically to serve as living floors. The site of An Son is of this type and lies in a small valley immediately north of the Mekong Delta in southern Vietnam. Excavated on five occasions since 1978, and most recently in 2009, it was occupied from the late third into the late second millennium b.c . An Son has produced evidence that attests the domestication of pigs and dogs in all layers apart (perhaps) from the most basal one, which was not investigated in 2009, together with the growing of rice of the subspecies Oryza sativa japonica , of Chinese Neolithic origin. The oldest pottery has simple incised and punctate zoned decoration with parallels in central Thailand, especially in the basal phases at Nong Nor and Khok Phanom Di. From its middle and later occupation phases (1800–1200 b.c .), An Son has produced a number of supine extended burials with finely decorated pottery grave goods that carry some unique forms, especially vessels with wavy or serrated rims. The An Son burials represent a Neolithic population that expressed a mixture of both indigenous Hoabinhian and more northerly (probably Neolithic southern Chinese) cranial and dental phenotypes, perhaps representing a likely ancestral population for some of the modern Austroasiatic-speaking populations of mainland Southeast Asia.

Rice (Oryza sativa) was domesticated in the Yangtze Valley region at least 6000–8000 years ago, yet the timing of dispersal of domesticated rice to Southeast Asia is contentious. Often rice is not well-preserved in archaeobotanical assemblages at early Neolithic sites in the wet tropics of Southeast Asia and consequently rice impressions in pottery have been used as a proxy for rice cultivation despite their uncertain taxonomic and domestication status. In this research, we use microCT technology to determine the 3D microscale morphology of rice husk and spikelet base inclusions within pottery sherds from early Neolithic sites in Vietnam. In contrast to surface impressions, microCT provides images of the entire husk and spikelet base preserved within the pottery, including the abscission scar characteristic of domesticated rice. This research demonstrates the potential of microCT to be a new, non-destructive method for the identification of domesticated plant remains within pottery sherds, especially in contexts where archaeobotanical preservation is poor and chaff-tempered sherds are rare and unavailable for destructive analysis. The method has the potential to greatly advance the understanding of crop domestication and agricultural dispersal for ceramic cultures in different parts of the world.

The Neolithic in Mainland Southeast Asia is considered to be the period of human prehistory that commenced with the transition from hunting and gathering into mixed economies of foraging and farming. It lasted until the appearance of copper and bronze metallurgy and thus dates between circa 2500 and 1200 BC. In Vietnam, Neolithic sites and cultures are recorded especially around the edges of the Red River delta, along the northern and central coasts, and in the southern river basins between the Đông Nai and lower Mekong. This period of Vietnamese prehistory was characterized by the southward movements of East Asian Neolithic populations from southern China across Mainland Southeast Asia, the introduction of cereal cultivation (rice and foxtail millet), and the management of domesticated pigs and dogs. The Neolithic of Vietnam also reveals material culture relationships extending from southern China to central Thailand. Recent research is also starting to highlight social and cultural diversity during this period, together with the development of significant exchange networks.

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