Rapid recognition of the sources of drugs can provide some valuable clues and the basis for determining the nature of the case. A novel recognition method was put forward to identify the sources of heroin drugs rapidly and non-destructively by using a hand-held near infrared (NIR) spectrometer and a multi-layer-extreme learning machine (ML-ELM) algorithm. In contrast to traditional linear discriminant analysis (LDA), support vector machine (SVM) and extreme learning machine (ELM) algorithms, the accuracy, sensitivity and specificity were the highest for the proposed ML-ELM algorithm. The prediction accuracy of the ML-ELM algorithm was 25.33, 20.00, 17.33% higher than that of LDA, SVM and ELM algorithm, respectively, for 4 cases. The ML-ELM models for recognizing the different sources of heroin drugs had the best generalization ability and prediction results. The experimental results indicated that the combination of the hand‑held NIR technology and ML-ELM algorithm can recognize the different sources of heroin drugs rapidly, accurately, and non-destructively on the spot.