Sirtuins are NAD+-dependent protein lysine deacylase and mono-ADP ribosylases present in both prokaryotes and eukaryotes. The sirtuin family comprises seven isoforms in mammals, each possessing different subcellular localization and biological functions. Sirtuins have received increasing attention in the past two decades given their pivotal functions in a variety of biological contexts, including cytodifferentiation, transcriptional regulation, cell cycle progression, apoptosis, inflammation, metabolism, neurological and cardiovascular physiology and cancer. Consequently, modulation of sirtuin activity has been regarded as a promising therapeutic option for many pathologies. In this review, we provide an up-to-date overview of sirtuin biology and pharmacology. We examine the main features of the most relevant inhibitors and activators, analyzing their structure–activity relationships, applications in biology, and therapeutic potential.
MINA53 is a JmjC
domain 2-oxoglutarate-dependent oxygenase that
catalyzes ribosomal hydroxylation and is a target of the oncogenic
transcription factor
c
-MYC. Despite its anticancer
target potential, no small-molecule MINA53 inhibitors are reported.
Using ribosomal substrate fragments, we developed mass spectrometry
assays for MINA53 and the related oxygenase NO66. These assays enabled
the identification of 2-(aryl)alkylthio-3,4-dihydro-4-oxoypyrimidine-5-carboxylic
acids as potent MINA53 inhibitors, with selectivity over NO66 and
other JmjC oxygenases. Crystallographic studies with the JmjC demethylase
KDM5B revealed active site binding but without direct metal chelation;
however, molecular modeling investigations indicated that the inhibitors
bind to MINA53 by directly interacting with the iron cofactor. The
MINA53 inhibitors manifest evidence for target engagement and selectivity
for MINA53 over KDM4–6. The MINA53 inhibitors show antiproliferative
activity with solid cancer lines and sensitize cancer cells to conventional
chemotherapy, suggesting that further work investigating their potential
in combination therapies is warranted.
LSD1 is a lysine demethylase highly involved in initiation and development of cancer. To design highly effective covalent inhibitors, a strategy is to fill its large catalytic cleft by designing tranylcypromine (TCP) analogs decorated with long, hindered substituents. We prepared three series of TCP analogs, carrying aroyl‐ and arylacetylamino (1 a–h), Z‐amino acylamino (2 a–o), or double‐substituted benzamide (3 a–n) residues at the C4 or C3 position of the phenyl ring. Further fragments obtained by chemical manipulation applied on the TCP scaffold (compounds 4 a–i) were also prepared. When tested against LSD1, most of 1 and 3 exhibited IC50 values in the low nanomolar range, with 1 e and 3 a,d,f,g being also the most selective respect to monoamine oxidases. In MV4‐11 AML and NB4 APL cells compounds 3 were the most potent, displaying up to sub‐micromolar cell growth inhibition against both cell lines (3 a) or against NB4 cells (3 c). The most potent compounds in cellular assays were also able to induce the expression of LSD1 target genes, such as GFI‐1b, ITGAM, and KCTD12, as functional read‐out for LSD1 inhibition. Mouse and human intrinsic clearance data highlighted the high metabolic stability of compounds 3 a, 3 d and 3 g. Further studies will be performed on the new compounds 3 a and 3 c to assess their anticancer potential in different cancer contexts.
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