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Dispersal plays a key role to connect populations and, if limited, is one of the main processes to maintain and generate regional biodiversity. According to neutral theories of molecular evolution and biodiversity, dispersal limitation of propagules and population stochasticity are integral to shaping both genetic and community structure. We conducted a parallel analysis of biological connectivity at genetic and community levels in marine groups with different dispersal traits. We compiled large data sets of population genetic structure (98 benthic macroinvertebrate and 35 planktonic species) and biogeographic data (2193 benthic macroinvertebrate and 734 planktonic species). We estimated dispersal distances from population genetic data (i.e., FST vs. geographic distance) and from β-diversity at the community level. Dispersal distances ranked the biological groups in the same order at both genetic and community levels, as predicted by organism dispersal ability and seascape connectivity: macrozoobenthic species without dispersing larvae, followed by macrozoobenthic species with dispersing larvae and plankton (phyto- and zooplankton). This ranking order is associated with constraints to the movement of macrozoobenthos within the seabed compared with the pelagic habitat. We showed that dispersal limitation similarly determines the connectivity degree of communities and populations, supporting the predictions of neutral theories in marine biodiversity patterns.

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The hypothesis that the presence of fish farming zones affects the water quality and plankton communities was investigated in an Aegean Sea fish farm during February, June, September and January 2000–2001. In the spatial coverage, a total of 12 stations were sampled; three of them were reference stations. A variance analysis was applied to the measurements made at the stations near the fish farms and at the control stations. While no significant differences in concentrations of nutrients, chlorophyll a, particulate organic carbon and particulate organic nitrogen were detected between the stations and the control sites within one season, significant differences were detected between the parameter values measured except for total dissolved phosphorus and dissolved organic phosphorus at different seasons. The seasonal differences were also significant with regard to the biodiversity. Together with these temporal differences in general, there was a higher diversity of species at the control site as compared with the other stations in September, which was the key season to detection of significant changes. The most important consideration is that it is not sufficient to take the instantaneous values for the physico‐chemical variables; rather, it is necessary to monitor the biological parameters in order to define the differences in the ecosystem.