We analyze the first 30 orbits of Juno to retrieve the properties of current systems and plasma flows associated with Jovian main auroras.• Southern hemisphere results are consistent with ionospheric plasma sub-corotation.• The two opposite patterns, sub-corotation and super-corotation, are observed in the northern hemisphere.

Even after half a century of development, many phenomena in Hall Effect Thrusters are still not well-understood. While numerical studies are now widely used to study this highly non-linear system, experimental diagnostics are needed to validate their results and identify specific oscillations. By varying the cathode heating current, its emissivity is efficiently controlled and a transition between two functioning regimes of a low power thruster is observed. This transition implies a modification of the axial electric field and of the plasma plume shape. High-speed camera imaging is performed and the data are analysed using a Proper Orthogonal Decomposition method to isolate the different types of plasma fluctuations occurring simultaneously. The low-frequency breathing mode is observed, along with higher frequency rotating modes that can be associated to rotating spokes or gradient-induced instabilities. These rotating modes are observed while propagating outside the thruster channel. The reduction of the cathode emissivity beyond the transition comes along with a disappearance of the breathing mode, which could improve the thruster performance and stability.