Summary Degradation of floodplains continues with an increasing number of floodplain lakes disconnected from the fluvial dynamics of rivers. Limited understanding is available as to how historical geomorphic formation processes (i.e. geomorphic legacy) determine contemporary ecosystem structure and function. We tested the hypothesis that geomorphic legacy mediates morphometry and results in heterogeneity of macrophyte distributions in disconnected floodplain lakes. The distribution of macrophyte cover was examined in relation to environmental factors, including water nutrient level, morphometry of lakes and patch shelter level across and among three types of lakes along the Ishikari River, Japan. Artificial lakes (isolated by channelisation), natural oxbow lakes and marsh lakes have been disconnected for more than 40 years from natural flood pulses because of dyke construction. The presence of macrophytes (in 5 × 5 m areas) was predicted well by a combination of local water depth and bed slope. Lake average depth, higher values indicating lakes that are more deeply incised with a steeper‐sloped littoral zone, had the strongest and most negative influence on total macrophyte cover across lakes. Cover was least in artificial lakes because of greater average depth. Predicted area of macrophyte cover was significantly less than occupied by actual cover in artificial lakes compared with other lake types. Macrophyte cover in artificial lakes was particularly vulnerable to external factors such as waves and wind. This study underscored the significance of geomorphic legacy in explaining a large proportion of heterogeneity of total macrophyte cover in the study lakes. Artificial lakes did not have the macrophyte habitat quality of natural lakes. When lake morphometry needs to be altered, local conditions as well as patch‐scale properties should be carefully examined in the light of the geomorphic legacy left by dynamic river–floodplain interactions.

Interspecific variation in diel‐scale temporal niches is common in natural communities. Such variation changes population dynamics via effects on the growth and reproduction of individuals. Also at the community level, theory predicts that animals can reduce competition for shared resources by changing diel activity in certain situations. However, the role of diel activity at the community‐level has not been examined sufficiently. In this study, to examine whether the diel‐scale temporal niche act as a competition‐mitigating mechanism for stream fishes at the community level, we surveyed diel changes in microhabitat use and foraging, and the pattern of interspecific diet overlap in the middle reaches of a temperate stream where various fish species that seemed to be either nocturnal or diurnal coexisted. Our results suggest that the fishes forage during both daytime and night, but change their foraging mode at different times of the day, so that the foraging habits of these fish species cannot be divided simply into nocturnal and diurnal. Furthermore, fishes appeared to aggregate in the vicinity of common food resources during time zones with high availability of the resources, and therefore, inter‐guild diet overlap was high during certain time zones. On the other hand, when inter‐guild diet overlap was low, each fish species used foods or microhabitats that did not any have the potential to be used by species of another guild. Therefore, we conclude that variation in diel niche use is influenced by variation in the fundamental niche and food supply or availability rather than by competitive interaction between fishes in the stream fish community.

The genetic population structure of the small cyprinid Hemigrammocypris rasborella, distributed widely in lowlands of western Japan, was examined using partial sequence data of mitochondrial DNA (mtDNA). Molecular phylogenetic analysis revealed that the populations of the western Kyushu region were markedly differentiated from all eastern populations, such that the groups would be comparable to different species; their divergence was inferred to have occurred in the Late Miocene-Pliocene. Also, a largely divergent mtDNA group (with divergence in the early Pleistocene) was found in the Sanyo and northeastern Shikoku regions, forming a secondary contact zone in the western Kinki with the eastern mtDNA group. To date, these aspects of the population structure of H. rasborella appear to be unique among lowland fishes in western Japan. Deeper understanding of the formation processes of freshwater faunas in western Japan will require further comparisons of the phylogeographic patterns and ecological traits of constituent species.

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