The total force between two like charged surfaces is investigated as a function of counterion concentration in aqueous solution and surfaces distance of separation. A smooth and a discrete density of surface charge sigma(s) lead to differences in the force distance curve at high sigma(s), which are negligible for low surface charge. The total force per unit area with divalent counterions is an oscillating function of sigma(s). At fixed surfaces separation and region of attraction (increasing sigma(s)), there is a variation in its strength that results from a competition between the ideal kinetic and ion-ion correlation force components as predicted from the anisotropic hypernetted chain approximation.

The complexation isotherms of DNA plus lipids of a symmetric lamellar cationic lipid-DNA system were determined within a mean field free energy. The free energy incorporates the ion's finite size of NaCl simple electrolyte in solution and makes use of known structure data on this complex. The results for the predicted isotherms are in qualitative agreement with the trends of the experimental data for this property.

We have studied theoretically the compressibility modulus B of DNA and complexation adsorption isotherms of DNA and lipids, as a function of DNA spacing d(DNA) and NaCl electrolyte concentration, respectively, in isoelectric states of lamellar DNA/cationic lipid (CL) self-assemblies. The electrostatic free energy derived from the Poisson-Boltzmann theory predicts partial agreement with measured B values for interhelical separations d(DNA)>33 A when use is made of a fit of hydration repulsion from bulk DNA hexagonal phases in solution. For lower interchain separations the prediction worsens due to the hydration interaction that overcomes the electrostatic contribution. An exact match of the system's counterion electrochemical potentials and the coions of salt in aqueous phase leads to the electrostatic part of the free energy that renders isotherms of d(DNA) versus ionic strength in qualitative consistency with general trends of available experimental data of CL-DNA complexes.

This paper presents an exploratory analysis of the mitochondrial DNA (mtDNA) of 32 species in the subphylum Vertebrata, divided in 7 taxonomic classes. Multiple stochastic parameters, such as the Hurst and detrended fluctuation analysis (DFA) exponents, Shannon entropy, and Chargaff ratio are computed for each DNA sequence. The biological interpretation of these parameters leads to defining a triplet of novel indices. These new functions incorporate the long-range correlations, the probability of occurrence of nucleic bases, and the ratio of pyrimidines-to-purines. Results suggest that relevant regions in mtDNA can be located using the proposed indices. Furthermore, early results from clustering algorithms indicate that the indices introduced might be useful in phylogenetic studies.

Articles you may be interested inObservation of spermidine-induced attractive forces in self-assembled monolayers of single stranded DNA using a microcantilever sensor Appl. Phys. Lett. 98, 153704 (2011); 10.1063/1.3580775Self-assembly of cholesterol DNA at liquid crystal/aqueous interface and its application for DNA detection Appl. Phys. Lett. 95, 153702 (2009); Abstract. The number of counterions released by oppositely charged objects, in aqueous solvents, upon their self-assembly was investigated with mean field and liquid theory approaches. We find that both Poisson-Boltzmann (PB) equation and liquid theory lead to the same amount of ion's excess in the slit of asymmetrically charged plates at small plates separation and salt concentration. The incorporation of ion's size in PB equation does not lead to important corrections on the predicted excess of ions as compared to PB equation for pointlike ions when it is applied to study the selfassembly made by cationic lipids and DNA.