In Bacteria and Archaea (formerly Archaebacteria) ribosomal protein L1 has a dual function, as a primary rRNA-binding protein and as a translational repressor which binds to its own mRNA. The L1-binding site on the mRNA exhibits high similarity in both sequence and secondary structure to the binding site for L1 on the 23 S rRNA. A sensitive membrane-filter-binding assay has been used to examine the interactions between ribosomal L1 proteins from different archaeal and bacterial species, and 23S rRNA and mRNA fragments from Methanococcus vannielii containing the MvaL1-binding site. Under standard conditions (0°C, pH 7.5, 20 mM Mg 2ϩ , 500 mM KCl), the apparent dissociation constant Kd of the homologous MvaL1-23S rRNA complex is 5 nM, the apparent dissociation constant K d of the MvaL1-mRNA complex is 0.15 µM. L1 proteins from Escherichia coli (EcoL1) and from the thermophilic Bacterium Thermus thermophilus (TthL1), and from the thermophilic Archaea Methanococcus thermolithotrophicus (MthL1), Methanococcus jannaschii (MjaL1), and Sulfolobus solfataricus (SsoL1) were tested for their affinity to the specific L1-binding sites on the 23 S rRNA and mRNA. In general, the affinity of L1 proteins from thermophilic species to the binding sites on both 23 S rRNA and mRNA is about one order of magnitude higher than that of their mesophilic counterparts. This stronger protein-RNA interaction might make a substantial contribution to the thermal tolerance of ribosomes in thermophilic organisms.Keywords : RNA-ribosomal protein L1 interaction ; filter-binding assay; Archaea ; mesophilic and thermophilic Methanococcus.Over the last two decades, a growing number of organisms living at temperatures close to or above the boiling point of water have been discovered. With a few (bacterial) exceptions, they have been classified as Archaea [1]. The adaption of these thermophilic organisms requires, amongst a number of modifications at the molecular level, a structural response of the ribosomes to ensure both high efficiency and high accuracy of the translational machinery at high temperatures. To date, very little is known about the molecular mechanisms regulating the thermal stabilization of ribosomes. Only for the hyperthermophilic Crenarchaeon, Sulfolobus solfataricus, have the mechanisms involved in the thermal stabilization of ribosomes been investigated in some detail. The heat stability of both 50S and 30S ribosomal subunits appears to be accounted for by the intrinsic stabilization of the helical rRNA domains (by a higher number of GϩC base pairs) and by a more extensive interaction between ribosomal proteins and rRNA [2Ϫ4].Ribosomal protein L1 from mesophilic and (hyper)thermophilic organisms is particularly suitable to study the specific interaction with RNA. In Bacteria and Archaea, ribosomal protein L1 has a dual function as a primary rRNA-binding protein and as a translational repressor. The primary and secondary structure of the L1-binding region on the 23S and 28S rRNA is highly conserved in Bacteria, Archaea and Eukarya ...