A number of cophylogenetic relationships between two organisms namely a host and a symbiont or parasite have been studied to date; however, organismal interactions in nature usually involve multiple members. Here, we investigated the cospeciation of a triplex symbiotic system comprising a hierarchy of three organisms -- termites of the family Rhinotermitidae, cellulolytic protists of the genus Pseudotrichonympha in the guts of these termites, and intracellular bacterial symbionts of the protists. The molecular phylogeny was inferred based on two mitochondrial genes for the termites and nuclear small-subunit rRNA genes for the protists and their endosymbionts, and these were compared. Although intestinal microorganisms are generally considered to have looser associations with the host than intracellular symbionts, the Pseudotrichonympha protists showed almost complete codivergence with the host termites, probably due to strict transmissions by proctodeal trophallaxis or coprophagy based on the social behaviour of the termites. Except for one case, the endosymbiotic bacteria of the protists formed a monophyletic lineage in the order Bacteroidales, and the branching pattern was almost identical to those of the protists and the termites. However, some non-codivergent evolutionary events were evident. The members of this triplex symbiotic system appear to have cospeciated during their evolution with minor exceptions; the evolutionary relationships were probably established by termite sociality and the complex microbial community in the gut.

Phylogenetic analysis based on sequence variation in mitochondrial large‐subunit rRNA and cytochrome oxidase II genes was used to investigate the evolutionary relationships among termite families. Maximum likelihood and parsimony analyses of a combined nucleotide data set yield a single well‐supported topology, which is: (((((Termitidae, Rhinotermitidae), Serritermitidae), Kalotermitidae), (Hodotermitidae, Termopsidae)), Mastotermitidae). Although some aspects of this topology are consistent with previous schemes, overall it differs from any published. Optimization of ‘true’ workers onto the tree suggests that this caste originated once, early in the history of the lineage and has been lost secondarily twice. This scenario differs from the more widely accepted notion that workers are derived and of polyphyletic origin and that extant pseudergates, or ‘false’ workers, are their developmentally unspecialized ancestor caste. Worker gains and losses covary directly in number and direction with shifts in ‘ecological life type’. A test for correlated evolution which takes phylogenetic structure into account indicates that this pattern is of biological significance and suggests that the variable occurrence of a worker caste in termites has ecological determinants, apparently linked to differences in feeding and nesting habits.

The most ecologically successful and destructive termite species are those with both a nymph caste and an irreversibly wingless worker caste. The early developmental bifurcation separating these castes is widely accepted to be strictly environmentally determined. We present evidence that genotype also influences this process. Offspring from four different crosses of nymph- and worker-derived secondary reproductive individuals had strongly differentiated caste and sex ratios, despite uniform rearing conditions. These data fit an X-linked, one-locus-two-allele model. Of five possible genotypes, one was lethal, two resulted in workers, and two resulted in either nymphs or environmentally determined workers. Caste is thus controlled both by environment and by a complex genetic inheritance pattern.

A unique lineage of bacteria belonging to the order Bacteroidales was identified as an intracellular endosymbiont of the protist Pseudotrichonympha grassii (Parabasalia, Hypermastigea) in the gut of the termite Coptotermes formosanus. We identified the 16S rRNA, gyrB, elongation factor Tu, and groEL gene sequences in the endosymbiont and detected a very low level of sequence divergence (<0.9% of the nucleotides) in the endosymbiont population within and among protist cells. The Bacteroidales endosymbiont sequence was affiliated with a cluster comprising only sequences from termite gut bacteria and was not closely related to sequences identified for members of the Bacteroidales attached to the cell surfaces of other gut protists. Transmission electron microscopy showed that there were numerous rod-shaped bacteria in the cytoplasm of the host protist, and we detected the endosymbiont by fluorescence in situ hybridization (FISH) with an oligonucleotide probe specific for the 16S rRNA gene identified. Quantification of the abundance of the Bacteroidales endosymbiont by sequence-specific cleavage of rRNA with RNase H and FISH cell counting revealed, surprisingly, that the endosymbiont accounted for 82% of the total bacterial rRNA and 71% of the total bacterial cells in the gut community. The genetically nearly homogeneous endosymbionts of Pseudotrichonympha were very abundant in the gut symbiotic community of the termite.Symbiotic microorganisms that inhabit the guts of termites enable the termites to feed on lignocelluloses (4, 13, 21). The gut microbiota forms a dense and complex symbiotic community consisting of both flagellated protists (single-cell eukaryotes) and prokaryotes. Recent culture-independent studies based on molecular sequences have enabled us to classify the gut symbionts phylogenetically as both protists (22,26) and prokaryotes (9, 16-18, 23-25, 28, 29). These studies revealed that a great majority of the prokaryotes in the gut are novel organisms that have not been cultivated, which has limited our knowledge of termite gut symbionts.Associations of prokaryotes with gut protists are frequently observed, and gut protists themselves are the hosts of prokaryotic symbionts (21). In fact, the protist-associated prokaryotes comprise a significant portion of the gut microbial community (3). Previous observations revealed the presence of methanogens within cells (as endosymbionts) and spirochetes attached to cell surfaces (as ectosymbionts) of the gut protists, and these groups of prokaryotes have been identified in situ and classified phylogenetically by using molecular sequences (references 8, 12, 20, 33, and 35 and references therein). Recently, bacteria belonging to the order Bacteroidales were identified as ectosymbionts of a number of protist species in termite guts (18,30,35), but they belong to at least three polyphyletic lineages in this order (18). These studies and other studies have gradually disclosed bacterial species associated with gut protists of termites and the spatial distribution of t...