The program adiabat_1ph is a simple text‐menu driver for subroutine versions of the algorithms MELTS, pMELTS, and pHMELTS [Asimow et al., 2004; Ghiorso et al., 2002; Ghiorso and Sack, 1995]. It may be used to calculate equilibrium assemblages along a thermodynamic path set by the user and can simultaneously calculate trace element distributions. The MELTS family of algorithms is suitable for multicomponent systems, which may be anhydrous, water‐undersaturated, or water‐saturated, with the options of buffering oxygen fugacity and/or water activity. A wide variety of calculations can be performed either subsolidus or with liquid(s) present; melting and crystallization may be batch, fractional, or continuous. The software is suitable for Linux, MacOS X, and Windows, and many aspects of program execution are controlled by environment variables. Perl scripts are also provided that may be used to invoke adiabat_1ph with some command line options and to produce output that may be easily imported into spreadsheet programs, such as Microsoft Excel. Benefits include a batch mode, which allows almost complete automation of the calculation process when suitable input files are written. This technical brief describes version 1.04, which is provided as . Binaries, scripts, documentation, and example files for this and future releases may be downloaded at http://www.gps.caltech.edu/~asimow/adiabat. On a networked computer, adiabat_1ph automatically checks whether a newer version is available.
Finite element analysis (FEA) is used by industrial designers and biomechanicists to estimate the performance of engineered structures or human skeletal and soft tissues subjected to varying regimes of stress and strain. FEA is rarely applied to problems of biomechanical design in animals, despite its potential to inform structure-function analysis. Non-invasive techniques such as computed tomography scans can be used to generate accurate three-dimensional images of structures, such as skulls, which can form the basis of an accurate finite element model. Here we have applied this technique to the long skull of the large carnivorous theropod dinosaur Allosaurus fragilis. We have generated the most geometrically complete and complex FEA model of the skull of any extinct or extant organism and used this to test its mechanical properties and examine, in a quantitative way, long-held hypotheses concerning overall shape and function. The combination of a weak muscle-driven bite force, a very 'light' and 'open' skull architecture and unusually high cranial strength, suggests a very specific feeding behaviour for this animal. These results demonstrate simply the inherent potential of FEA for testing mechanical behaviour in fossils in ways that, until now, have been impossible.
Density functional calculations are performed to identify features observed in STM experiments after phosphine (PH3) dosing of the Si(001) surface. On the basis of a comprehensive survey of possible structures, energetics, and simulated STM images, three prominent STM features are assigned to structures containing surface bound PH2, PH, and P, respectively. Collectively, the assigned features outline for the first time a detailed mechanism of PH3 dissociation and P incorporation on Si(001).
Using density functional theory and guided by extensive scanning tunneling microscopy (STM) image data, we formulate a detailed mechanism for the dissociation of phosphine (PH3) molecules on the Si(001) surface at room temperature. We distinguish between a main sequence of dissociation that involves PH2+H, PH+2H, and P+3H as observable intermediates, and a secondary sequence that gives rise to PH+H, P+2H, and isolated phosphorus adatoms. The latter sequence arises because PH2 fragments are surprisingly mobile on Si(001) and can diffuse away from the third hydrogen atom that makes up the PH3 stoichiometry. Our calculated activation energies describe the competition between diffusion and dissociation pathways and hence provide a comprehensive model for the numerous adsorbate species observed in STM experiments.
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