Ochratoxin A (OTA) produced by mycotoxigenic fungi (Aspergillus and Penicillium spp.) is an extremely toxic and carcinogenic metabolite. The use of cold plasma to inhibit toxin-producing microorganisms in coffee could be an important alternative to avoid proliferation of mycotoxigenic fungi. Roasted coffee samples were artificially inoculated with A. westerdijikiae, A. steynii, A. versicolor, and A. niger, and incubated at 27 °C over 21 days for OTA production. Samples were cold plasma treated at 30 W input power and 850 V output voltage with helium at 1.5 L/min flow. OTA production in coffee was analyzed by high performance liquid chromatography coupled to a mass spectrometer (HPLC-MS). After 6 min of treatment with cold plasma, fungi were completely inhibited (4 log reduction). Cold plasma reduces 50% of OTA content after 30 min of treatment. Toxicity was estimated for extracts of artificially contaminated roasted coffee samples using the brine shrimp (Artemia salina) lethality assay. Toxicity for untreated roasted coffee was shown to be “toxic”, while toxicity for cold plasma treated coffee was reduced to “slightly toxic”. These results suggested that cold plasma may be considered as an alternative method for the degradation and reduction of toxin production by mycotoxigenic fungi in the processing of foods and feedstuffs.

A total of fourteen roasted coffee samples were collected from different local markets in Nayarit, Mexico. Twenty-two fungi isolates were related to the genera (54.54%) and (4.5%). The strains R16 (0.33 μg/kg), 6N (1.16 μg/kg) and 11 (0.36 μg/kg) tested positive for OTA (ochratoxin A) production in PDA, the other fungi samples were not toxigenic. According to the sequence analysis of their ITS1-5.8S-ITS2 rDNA region, fungi OTA producers correspond to , and . These three strains were able to produce OTA when inoculated in roasted coffee in concentrations ranging from 75 to 90 μg/kg, after 21 days. Different production stages of roasted coffee (crop management, postharvest practices and storage) along with environmental conditions do not ensure mycotoxigenic fungi free products. This is the first report of OTA natural occurrence in roasted coffee from Nayarit.

In the present chapter, results about the efficacy of chitosan (Chi) on sporulation, mycelial growth, germination, as well as quality parameters on fruits are shown. The results demonstrate that chitosan can control various phytopathogen isolates from diverse fruits. The pathogens in the genera Colletotrichum, Fusarium, and Rhizopus are involved in important postharvest disease losses throughout the world. In Nayarit, producers had reported high postharvest losses not only at field but also during the commercial chain with their products, besides the resistance of several pathogens to fungicides, which traditionally are applied for controlling diseases. In this sense, the aim of this research group is focused on the research of alternative and effective methods for controlling postharvest diseases. In vivo results are promising due to a good control in important tropical fruits like banana, avocado, mango, and jackfruit. An enhancement in the chitosan antimicrobial activity is reported with the combination with GRAS substances, as well as the use of nanotechnology. Chitosan can be an environment-friendly alternative to the use of chemical fungicides for controlling postharvest diseases in fruits.