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The Great Barrier Reef shelf ecosystem is examined for nutrient enrichment from within the seasonal thermocline of the adjacent Coral Sea using moored current and temperature recorders and chemical data from a year of hydrology cruises at 3 to 5 wk intervals. The East Australian Current is found to pulsate in strength over the continental slope with a period near 90 d and to pump cold, saline, nutrient rich water u p the slope to the shelf break. The nutrients are then pumped inshore in a bottom Ekman layer forced by periodic reversals in the longshore wind component. The period of this cycle is 12 to 25 d in summer (30 d year round average) and the bottom surges have a n alternating onshoreoffshore speed up to 10 cm S-'. Upwelling intrusions tend to b e confined near the bottom and phytoplankton development quickly takes place inshore of the shelf break. There are return surface flows which preserve the mass budget and carry silicate rich Lagoon water offshore while nitrogen rich shelf break water is carried onshore. Upwelling intrusions penetrate across the entire zone of reefs, but rarely into the Lagoon. Nutrition is del~vered out of the shelf thermocline to the living coral of reefs by localised upwelling induced by the reefs. Bottom chlorophyll concentrations average 0.4 mg m-3 a t the inner reefs and 0.8 mg m-3 near the shelf break while surface concentrations average 0.3 mg m-3; annual top and bottom variances are respectively 0.5 and 1.9 m g m-3 and there is no apparent seasonal cycle. The estimated onshore nitrogen flux in a 10 m thick bottom layer gives an annual nitrogen input of 20 yg at 1-' throughout the water column in a 50 km zone of reefs, a n enormous value for tropical waters.

Karenia mikimotoi is one of the most common red-tide dinoflagellates proliferating in the eastern North Atlantic and around Japan. Kills of marine fauna are associated with its blooms. In mixed water columns it migrates vertically, while in stratified water columns, the population remains confined within pycnocline layers. Wind events, increasing mixing and agitation initiate declines in its populations. This paper is focused on the formulation of mortality rate relative to shear rate. Autotoxicity is demonstrated by the use of a synthetic toxin. Bioconvection observed in cultures allows the establishment of a trade-off between phototropism, which leads to the local accumulation of cells, and their autotoxicity, which would prevent cell concentration. The combination of these processes allows diffusion of the toxin into the underlying water, where it subsequently degrades. Confinement of the population in the pycnocline layer results also from another trade-off between growth conditions and shear-rate-modulated mortality. A simplified encounter kernel was introduced into the population dynamics equation to account for a mortality factor. Under realistic forcing conditions with a small number of parameters, this model reproduced the confinement of the population in the pycnocline layer, the proper timing and the duration of the recurrent K. mikimotoi bloom on the Ushant front (France).

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