The DNA interaction with cis-isomers of photosensitive azobenzenecontaining surfactants was studied by both experimental methods and computer simulation. It was shown that before the organization of micelles, such surfactants in the cis-conformation form associates of only a single type with a disordered orientation of molecules. In contrast, for trans-isomers, there exist two types of associates with headto-head or head-to-tail orientations of molecules in dependence on salt concentration in a solution. The comparison of cis-and trans-isomer binding to DNA and the influence of salt concentration on the formation of their complexes with DNA were studied. It was shown that cis-isomers interact with phosphate groups of DNA and that their molecules were also located along the minor groove of DNA.
The attachment of functional DNA to gold nanoparticles via polyadenine adsorption is a well-established technology. This approach was mainly viewed through the lens of changing the DNA charge in order to reduce the electrostatic barrier created by a similarly charged gold surface. However, altering the DNA charge results in the loss of its functionality. This work considers the adsorption process of polyadenines by force that artificially brings them closer to the surface. As a force source, we used the hybridization of a DNA strand carrying polyadenines with a complementary strand already attached to the surface. It was shown that the hybridization forces facilitated the adsorption of polyadenines. We believe that this approach is applicable in various areas where it is essential to preserve the functionality of DNA during conjugation with nanoparticles.
The effect of the presence of divalent and trivalent
metal ions
in solutions upon DNA packaging induced by the photosensitive azobenzene-containing
surfactant is considered. It has been shown that the addition of divalent
and trivalent metal ions does not affect the DNA–surfactant
interaction for both the cis- and the trans-isomers of the surfactant.
At the same time, the ionic strength of the solution, which is provided
by a certain concentration of the salt, has a huge impact. It affects
the association of surfactant molecules with each other and their
binding to DNA. It has been shown by computer simulation that cobalt
hexamine is attracted to the N7 atom of guanine in the major groove
of DNA and does not penetrate into grooves near the AT base pairs.
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