Metabarcoding has been used in a range of ecological applications such as taxonomic assignment, dietary analysis and the analysis of environmental DNA. However, after a decade of use in these applications there is little consensus on the extent to which proportions of reads generated corresponds to the original proportions of species in a community. To quantify our current understanding, we conducted a structured review and meta‐analysis. The analysis suggests that a weak quantitative relationship may exist between the biomass and sequences produced (slope = 0.52 ± 0.34, p < 0.01), albeit with a large degree of uncertainty. None of the tested moderators, sequencing platform type, the number of species used in a trial or the source of DNA, were able to explain the variance. Our current understanding of the factors affecting the quantitative performance of metabarcoding is still limited: additional research is required before metabarcoding can be confidently utilized for quantitative applications. Until then, we advocate the inclusion of mock communities when metabarcoding as this facilitates direct assessment of the quantitative ability of any given study.
Localized outbreaks of jellyfish, known as blooms, cause a variety of adverse ecological and economic effects. However, fundamental aspects of their ecology remain unknown. Notably, there is scant information on the role jellyfish occupy in food webs: in many ecosystems, few or no predators are known. To identify jellyfish consumers in the Irish Sea, we conducted a molecular gut content assessment of 50 potential predators using cnidarian-specific mtDNA primers and sequencing. We show that jellyfish predation may be more common than previously acknowledged: uncovering many previously unknown jellyfish predators. A substantial proportion of herring and whiting were found to have consumed jellyfish. Rare ingestion was also detected in a variety of other species. Given the phenology of jellyfish in the region, we suggest that the predation was probably targeting juvenile stages of the jellyfish life cycle.
Environmental DNA (eDNA) has been used in a variety of ecological studies and management applications. The rate at which eDNA decays has been widely studied but at present it is difficult to disentangle study‐specific effects from factors that universally affect eDNA degradation. To address this, a systematic review and meta‐analysis was conducted on aquatic eDNA studies. Analysis revealed eDNA decayed faster at higher temperatures and in marine environments (as opposed to freshwater). DNA type (mitochondrial or nuclear) and fragment length did not affect eDNA decay rate, although a preference for <200 bp sequences in the available literature means this relationship was not assessed with longer sequences (e.g. >800 bp). At present, factors such as ultraviolet light, pH, and microbial load lacked sufficient studies to feature in the meta‐analysis. Moving forward, we advocate researching these factors to further refine our understanding of eDNA decay in aquatic environments.
A review of the functional role of jellyfish in Ecopath with Ecosim (EwE) models by Pauly et al. [Pauly, D., Graham, W., Libralato, S., Morissette, L., and Deng Palomares, M. L. 2009. Jellyfish in ecosystems, online databases, and ecosystem models. Hydrobiologia, 616: 67–85.] a decade ago concluded that recreation of jellyfish population dynamics in models required additional ecological research and the careful consideration of their unique biology during model construction. Here, amidst calls for ecosystem-based management and the growing recognition of jellyfishes' role in foodwebs, we investigate how jellyfish are implemented in EwE models and identify areas requiring improvement. Over time, an increasing percentage of models have included jellyfish. Jellyfish were often linked to the wider ecosystem, with many predators and prey included in models. However, ecotrophic efficiency, a measure of the extent to which they are used by higher trophic levels, was frequently set at low values, suggesting that jellyfish are still perceived as under-utilized components of the ecosystem. Moving forward, greater care should be taken to differentiate the functional roles played by ctenophores, cnidarians, and pelagic tunicates. Additionally, when feasible, early life stages should be incorporated as multi-stanza groups to more accurately depict jellyfishes' complex life cycle.
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