The Malaysian states of Sabah and Sarawak are global hotspots of forest loss and degradation due to timber and oil palm industries; however, the rates and patterns of change have remained poorly measured by conventional field or satellite approaches. Using 30 m resolution optical imagery acquired since 1990, forest cover and logging roads were mapped throughout Malaysian Borneo and Brunei using the Carnegie Landsat Analysis System. We uncovered ∼364,000 km of roads constructed through the forests of this region. We estimated that in 2009 there were at most 45,400 km2 of intact forest ecosystems in Malaysian Borneo and Brunei. Critically, we found that nearly 80% of the land surface of Sabah and Sarawak was impacted by previously undocumented, high-impact logging or clearing operations from 1990 to 2009. This contrasted strongly with neighbouring Brunei, where 54% of the land area remained covered by unlogged forest. Overall, only 8% and 3% of land area in Sabah and Sarawak, respectively, was covered by intact forests under designated protected areas. Our assessment shows that very few forest ecosystems remain intact in Sabah or Sarawak, but that Brunei, by largely excluding industrial logging from its borders, has been comparatively successful in protecting its forests.

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Papua New Guinea (PNG) is an extensively forested country. Recent research suggests that despite commencing a trajectory of deforestation and degradation later than many counties in the Asia–Pacific region, PNG is now undergoing comparable rates of forest change. Here we explore the bioregional distribution of changes in the forest estate over the period 1972–2002 and examine their implications for forest protection. This is undertaken through the development of a novel bioregional classification of the country based on biogeographic regions and climatic zones, and its application to existing forest cover and forest‐cover change data. We found that degradation and deforestation varied considerably across the 11 defined biogeographic regions. We report that the majority of deforestation and degradation has occurred within all the lowland forests, and that it is these forests that have the greatest potential for further losses in the near term. The largest percentage of total change occurred in the east of PNG, in the islands and lowlands of the Bismarck, D'Entrecasteaux, East Papuan Islands and in the South‐East Papua–Oro region. The only region with a significant highlands component to undergo deforestation at a comparable magnitude to the islands and lowland regions was the Huon Peninsula and Adelbert region. Significant changes have also occurred at higher elevations, especially at the interface of subalpine grasslands and upper montane forests. Lower montane forests have experienced proportionally less change, yet it is these forests that constitute the majority of forests enclosed within the protected area system. We find that protected areas are not convincingly protecting either representative areas of PNG's ecosystems, nor the forests within their borders. We conclude by suggesting a more expansive and integrated approach to managing the national forest estate.