The new wave of successful generative models in machine learning has increased the interest in deep learning driven de novo drug design. However, method comparison is difficult because of various flaws of the currently employed evaluation metrics. We propose an evaluation metric for generative models called Fréchet ChemNet distance (FCD). The advantage of the FCD over previous metrics is that it can detect whether generated molecules are diverse and have similar chemical and biological properties as real molecules.
Due to the current severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) pandemic, there is an urgent need for novel therapies and drugs. We conducted a large-scale virtual screening for small molecules that are potential CoV-2 inhibitors. To this end, we utilized "ChemAI," a deep neural network trained on more than 220M data points across 3.6M molecules from three public drug-discovery databases. With ChemAI, we screened and ranked one billion molecules from the ZINC database for favourable effects against CoV-2. We then reduced the result to the 30,000 top-ranked compounds, which are readily accessible and purchasable via the ZINC database. Additionally, we screened the DrugBank using ChemAI to allow for drug repurposing, which would be a fast way towards a therapy. We provide these top-ranked compounds of ZINC and Drug-Bank as a library for further screening with bioassays at https://github.com/ml-jku/ sars-cov-inhibitors-chemai.
Finding synthesis
routes for molecules of interest is essential
in the discovery of new drugs and materials. To find such routes,
computer-assisted synthesis planning (CASP) methods are employed,
which rely on a single-step model of chemical reactivity. In this
study, we introduce a template-based single-step retrosynthesis model
based on Modern Hopfield Networks, which learn an encoding of both
molecules and reaction templates in order to predict the relevance
of templates for a given molecule. The template representation allows
generalization across different reactions and significantly improves
the performance of template relevance prediction, especially for templates
with few or zero training examples. With inference speed up to orders
of magnitude faster than baseline methods, we improve or match the
state-of-the-art performance for top-
k
exact match
accuracy for
k
≥ 3 in the retrosynthesis benchmark
USPTO-50k. Code to reproduce the results is available at
.
Clonidine augmented haemodynamic stability and partially blunted stress responses as determined by adrenocorticotropic hormone plasma levels. In addition, clonidine did not delay postoperative recovery. Therefore, surrogate parameters indicate that preanaesthetic medication with clonidine may be superior to midazolam in healthy individuals. Further studies have to confirm these results with regard to outcome parameters.
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