Roses, which have been cultivated for at least 5000 years, are one of the most important ornamental crops in the world. Because of the interspecific nature and high heterozygosity in commercial roses, the genetic resources available for rose are limited. To effectively identify markers associated with QTL controlling important traits, such as disease resistance, abundant markers along the genome and careful phenotyping are required. Utilizing genotyping by sequencing technology and the strawberry genome (Fragaria vesca v2.0.a1) as a reference, we generated thousands of informative single nucleotide polymorphism (SNP) markers. These SNPs along with known bridge simple sequence repeat (SSR) markers allowed us to create the first high-density integrated consensus map for diploid roses. Individual maps were first created for populations J06-20-14-3דLittle Chief” (J14-3×LC), J06-20-14-3דVineyard Song” (J14-3×VS) and “Old Blush”דRed Fairy” (OB×RF) and these maps were linked with 824 SNPs and 13 SSR bridge markers. The anchor SSR markers were used to determine the numbering of the rose linkage groups. The diploid consensus map has seven linkage groups (LGs), a total length of 892.2 cM, and an average distance of 0.25 cM between 3527 markers. By combining three individual populations, the marker density and the reliability of the marker order in the consensus map was improved over a single population map. Extensive synteny between the strawberry and diploid rose genomes was observed. This consensus map will serve as the tool for the discovery of marker–trait associations in rose breeding using pedigree-based analysis. The high level of conservation observed between the strawberry and rose genomes will help further comparative studies within the Rosaceae family and may aid in the identification of candidate genes within QTL regions.

Black spot disease, caused by the fungus Diplocarpon rosae Wolf, is one of the most serious diseases of garden roses. Both complete (vertical) resistance conditioned by dominant Rdr genes and partial (horizontal) resistance conditioned by multiple genes have been described. The use of resistant rose cultivars would reduce the demand of agrochemical applications. The characterization of 16 genotypes for resistance to black spot using two laboratory assays, the detached leaf assay (DLA) and the whole plant inoculation (WPI) approach, indicated that these techniques were well correlated. Thus, either method could be used to assess the resistance of the plants to black spot. Fifteen diploid hybrid populations from 10 parents segregating for partial (horizontal) resistance to black spot derived from Rosa wichuraiana ‘Basye’s Thornless’ (RW) were assessed for black spot resistance by quantifying the percentage of the leaf area with symptoms (LAS) and lesion length (LL) measured by the diameter of the largest lesion per leaf in DLAs. The narrow-sense heritability of partial resistance to black spot as measured by LAS and LL data of DLA was estimated to be from 0.28 to 0.43 when calculated with a genetic variance analysis and from 0.74 to 0.86 when generated from offspring–midparent regression. This suggests that the development of rose cultivars with high levels of stable partial resistance to black spot is a feasible approach for the rose industry.

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