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The Bongor Basin is a typical lacustrine passive-rifted basin situated in the West and Central African Rift System (WCARS). It has experienced two phases of tectonic inversion and features a complex process of petroleum generation and accumulation. A total of 41 crude oil samples from the basin were geochemically analyzed to investigate their compositions of molecular markers. The results show that the oils have similar origins and are likely to belong to the same oil population. However, there are significant differences in geochemical characteristics and physical properties, caused by the secondary alteration. The relative contents and distribution patterns of normal alkanes and acyclic isoprenoids indicate that some of the oils have suffered biodegradation to varying degrees. The samples can be divided into three categories according to their relative degrees of degradation: normal oil, slightly biodegraded oil (PM 1–3), and severely biodegraded oil (PM 5–7). The burial depth of oil reservoirs in this area is the predominant factor impacting on the level of biodegradation. Crude oils in reservoirs with burial depths of less than 800 m are all severely biodegraded, while oils in reservoirs with burial depths greater than 1300 m have experienced no evident biodegradation. In reservoirs with burial depths between 800 m and 1300 m, the biodegradation degrees vary from normal to severely biodegraded. Oil reservoirs with burial depths less than 1300 m and adjacent to major faults are readily subject to biodegradation, while reservoirs with similar burial depths, but a certain distance away from major faults, have suffered no evident biodegradation. Moreover, if primary reservoirs have been modified by tectonic activity after accumulation, the crude oils are more likely to be biodegraded. Faulted anticline traps may create more favorable geological conditions for preservation of crude oil than reverse extrusion anticline reservoirs. This study may provide practical guidance for the assessment and prediction of oil quality in future oil exploration.

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