We evaluated mini‐fyke nets for sampling shore‐based (SB; <1 m deep) fish communities in Florida lakes. Specifically, we wanted to determine the most effective deployment method and sample size required for adequately characterizing fish communities in these habitats. Shallow SB (0.15–0.6 m) net sets, in which nets were not completely submersed, collected significantly more individuals and a larger proportion of poeciliids. However, deep SB (0.6–1.0 m) net sets, in which nets were completely submersed, collected a larger proportion of centrarchids, cyprinids, and cyprinidontids. Net placement also significantly affected the overall catch and composition of samples. Nets placed in locations away from the lake boundary tended to collect actively schooling fishes such as Threadfin Shad Dorosoma petenense and cyprinids. Nets placed next to the lake boundary tended to collect species associated with shallow, vegetated habitats, particularly poeciliids, at greater frequencies. In some cases, the collection of these fishes was unique to a particular deployment method. Our results suggest that in long‐term monitoring of Florida's shore‐based lentic fish communities, nets should be placed in SB waters with the lead extending to the lake boundary. Although long‐term sampling objectives may vary, we determined that a sampling target of 30 net sets was sufficient for characterizing the fish community in terms of percentage composition, species richness, and species diversity. Furthermore, we recommend the continued use of additional gears to fully characterize littoral fish communities.Received December 19, 2013; accepted March 1, 2014