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1. We review the status of the four currently recognized guanaco Lama guanicoe subspecies, and provide information about their taxonomy and distribution. The success of guanaco in inhabiting open habitats of South America is based mainly on the flexibility of their social behaviour and ecophysiological adaptations to harsh environments. 2. Lönnberg described the first subspecies, L. g. cacsilensis , at the beginning of the 20th century. Forty years later Krumbiegel described L. g. voglii , based on skull measurements and pelage colouration. The other two subspecies, L. g. huanacus and L. g. guanicoe , were classified as subspecies by Krumbiegel based on pelage colouration and body size, while maintaining the original Latin names and descriptors. 3. Further guanaco populations have been incorporated into each of these subspecies, based on their proximity to the type locality but without attention to the homogeneity of phenotype or habitat and only limited consideration of Bergmann's rule based on scarce skulls. Two alternative geographical ranges were proposed in the middle and towards the end of the 20th century. Discrepancies occur in the geographical range of each subspecies. 4. Molecular studies based on mitochondrial DNA cytochrome b sequences recognized only two subspecies: the Peruvian L. guanicoe cacsilensis and the rest of the populations grouped in the clade recognized as L. g. guanicoe . We conclude that the evolutionary biology of L. guanicoe requires a significant revision with respect to biogeography. Phylogeographical data hold particular value in developing conservation strategies, particularly for some of the reduced and marginal populations and/or subspecies and will support IUCN (The World Conservation Union) Red List classification.

One of the most characteristic and abundant amphibian taxa of South American temperate forests is Eupsophus. The ten currently recognized species of the genus have been divided in two species groups, roseus and vertebralis, but most of them, eight, belong to the roseus group. Recent phylogeographic and phylogenetic studies have suggested that species diversity of the roseus group could be underestimated. An examination of the literature shows that species of the roseus group exhibit high levels of variation in their external characteristics, particularly those used as diagnostic characters, which compromises their taxonomy and hinders their field recognition. High levels of variation were also observed in several new populations of the roseus group discovered in southern Chile (36°-40°S), which could not be identified to the species level by their external characteristics. On the other hand, the literature reveals a scarse karyotype differentiation and a high bioacoustic uniformity among the species of the roseus group. We performed a Bayesian phylogenetic analysis using mitochondrial and nuclear genes to reevaluate the species diversity of the roseus group, including all the nominal species of Eupsophus and new populations. This analysis was complemented with three species delimitation approaches, General Mixed Yule Coalescent, multi-rate Poisson Tree Process and Automatic Barcode Gap Discovery. We favored a conservative delimitation of only four species for the roseus group, a result more consistent with the distribution of pairwise genetic distances, and the available chromosome and bioacoustic evidence. The four recognized lineages, which have nearly completely allopatric distributions, are named after the earliest nominal species that they include, but because high levels of phenotypic variation, they are not diagnosable by consistent differences in external morphology. We discuss the implications of this new proposal for the taxonomy and conservation of the genus, and the possible causes of the difficulty to estimate its species diversity.

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BackgroundMuch debate has focused on how transitions in life history have influenced the proliferation of some clades. Rodents of the subfamily Sigmodontinae (family Cricetidae) comprise one of the most diverse clades of Neotropical mammals (~400 living species in 86 genera). These rodents occupy a wide range of habitats and lifestyles so that ecological context seems relevant to understand the evolution of this group. Several changes in the landscape of South America through the Neogene might have provided vast resources and opportunity to diversify. The aim of this study was to examine whether transitions between i) lowland and montane habitats, ii) open vegetation and forest, and iii) distinct molar architectures are correlated with shifts in diversification rates and to characterize the general pattern of diversification.ResultsBased on a dense taxon sampling of 269 species, we recovered a new phylogeny of Sigmodontinae that is topologically consistent with those of previous studies. It indicates that the subfamily and its major lineages appeared during the Late Miocene. Analyses suggest that vegetation type and elevational range are correlated with diversification rates, but not molar architecture. Tropical lowlands accumulated more lineage diversity than other areas and also supported high speciation rates. Across the radiation the subfamily Sigmodontinae appear to have experienced a decline in diversification rate through time. We detected mixed evidence for lineage-specific diversification rate shifts (e.g., leading to the clades of Akodon, Bibimys, Calomys and Thomasomys).ConclusionWe report that the evolution of habitat preference (considering vegetation type and elevational range) was associated with diversification rates among sigmodontine rodents. We propose that the observed diversification slowdown might be the result of ecological or geographical constraints. Our results also highlight the influence of the tropical lowlands -which might have acted as both “a cradle and a museum of species.” The tropical lowlands accumulated greater diversity than the remainder of the group's range.Electronic supplementary materialThe online version of this article (doi:10.1186/s12862-015-0440-z) contains supplementary material, which is available to authorized users.