SummaryThe Ecuadorian coast has two main types of forests, which are differentiated by their phenology: dry forests are deciduous and more humid forests are evergreen. Less of the dry forests on the Ecuadorian coast is protected (13% of its area) than the evergreen forests (28%), and the area devoted to the protection of dry forests (1069 km2) is substantially less than the area devoted to the protection of evergreen forests (2800 km2). Yet the conservation status of dry forests is more critical, with 83% of their area classified as having very low connectivity, 70% as being highly fragile and 86% as being highly threatened. In addition, the dry forests have fewer protected areas than the evergreen forests. It is therefore necessary to increase the protection of deciduous ecosystems as part of a comprehensive national strategy because they support high levels of biodiversity and many endemic species.

Background Fragmentation and deforestation are one of the greatest threats to forests, and these processes are of even more concern in the tropics, where the seasonal dry forest is possibly one of the most threatened ecosystems with the least remaining surface area. Methods The deforestation and fragmentation patterns that had occurred in Ecuadorian seasonal dry forests between 1990 and 2018 were verified, while geographic information systems and land cover shapes provided by the Ecuadorian Ministry of the Environment were employed to classify and evaluate three types of seasonal dry forests: deciduous, semi-deciduous, and transition. The study area was tessellated into 10 km2 hexagons, in which six fragmentation parameters were measured: number of patches, mean patch size, median patch size, total edge, edge density and reticular fragmentation index (RFI). The RFI was also measured both outside and inside protected natural areas (unprotected, national protected areas and protected forest). Moreover, the areas with the best and worst conservation status, connectivity and risk of disappearance values were identified by means of a Getis-Ord Gi* statistical analysis. Results The deforestation of seasonal dry forests affected 27.04% of the original surface area still remaining in 1990, with an annual deforestation rate of − 1.12% between 1990 and 2018. The RFI has increased by 11.61% as a result of the fact that small fragments of forest have tended to disappear, while the large fragments have been fragmented into smaller ones. The semi-deciduous forest had the highest levels of fragmentation in 2018. The three categories of protection had significantly different levels of fragmentation, with lower RFI values in national protected areas and greater values in protected forests. Conclusions The seasonal dry forest is fragmenting, deforesting and disappearing in some areas. An increased protection and conservation of the Ecuadorian seasonal dry forest is, therefore, necessary owing to the fact that not all protection measures have been effective.