The HIV-1 Rev protein plays a key role in the late phase of virus replication. It binds to the Rev Response Element found in underspliced HIV mRNAs, and drives their nuclear export by the CRM1 receptor pathway. Moreover, mounting evidence suggests that Rev has additional functions in viral replication. Here we employed proteomics and statistical analysis to identify candidate host cell factors that interact with Rev. For this we studied Rev complexes assembled in vitro with nuclear or cytosolic extracts under conditions emulating various intracellular environments of Rev. We ranked the protein-protein interactions by combining several statistical features derived from pairwise comparison of conditions in which the abundance of the binding partners changed. As a validation set, we selected the eight DEAD/H box proteins of the RNA helicase family from the top-ranking 5% of the proteins. These proteins all associate with ectopically expressed Rev in immunoprecipitates of cultured cells. From gene knockdown approaches, our work in combination with previous studies indicates that six of the eight DEAD/H proteins are linked to HIV production in our cell model. In a more detailed analysis of infected cells where either DDX3X, DDX5, DDX17, or DDX21 was silenced, we observed distinctive phenotypes for multiple replication features, variously involving virus particle release, the levels of unspliced and spliced HIV mRNAs, and the nuclear and cytoplasmic concentrations of these transcripts. Altogether the work indicates that our top-scoring data set is enriched in Rev-interacting proteins relevant to HIV replication. Our more detailed analysis of several Revinteracting DEAD proteins suggests a complex set of functions for the helicases in regulation of HIV mRNAs. HIV-1 utilizes many host cell factors for its replication (1-3), similar to other viruses. There is strong interest in identifying and understanding these components to shed light on the molecular mechanisms of virus replication. Moreover, this can provide the potential for developing new therapeutics. The HIV Rev protein is a key regulator of viral replication that is critical for the late stages of virus replication (4, 5). The bestcharacterized function of Rev involves its potent stimulation of the nuclear export of unspliced and singly spliced ("underspliced") HIV transcripts that encode the viral structural proteins and accessory factors (5). In the absence of Rev, these transcripts are retained in the nucleus because of their incomplete splicing. At the molecular level, Rev binds and oligomerizes along the 351-nt Rev Response Element (RRE) 1 (6) in the env gene that is present in all underspliced HIV transcripts. Rev contains a classical leucine-rich nuclear export sequence that recruits CRM1, a transport receptor of the karyopherin family (7,8). CRM1 commonly is used for nuclear export of cellular proteins, and only infrequently is involved in cellular mRNA export (9, 10). Upon binding to the RRE together with the GTP-bound form of Ran, CRM1 forms the core ...

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