Summary 1. Understanding the processes that structure community assembly across landscapes is fundamental to ecology and for predicting and managing the consequences of anthropogenically induced changes to ecosystems. 2. We assessed the community similarity of fish, macroinvertebrate and vegetation communities against geographic distances ranging from 4 to 480 km (i.e. distance–decay relationships) to determine the balance between local environmental factors and regional dispersal processes, and thus whether species‐sorting (niche processes) or dispersal limitation (neutral processes) was more important in structuring these assemblages in Australia’s wet‐dry tropics. We investigated whether the balance between niche and dispersal processes depended on the degree of hydrological connectivity, predicting that dispersal processes would be more important at connected sites, and also whether there was spatial concordance among these three assemblage types. 3. There was significant but weak spatial concordance among the study communities, suggesting limited potential for surrogacy among them. Distance–decay in community similarity was not observed for any study assemblage at perennial sites, suggesting dispersal was not limiting and assemblages were structured more strongly by local niche processes at these connected sites. At intermittent sites, weak distance–decay relationships for each assemblage type were confounded by significant relationships with environmental dissimilarity, suggesting that dispersal limitation contributed, albeit weakly, to niche processes in structuring our three study assemblages at disconnected sites. 4. Two environmental factors, flow regime and channel width, explained significant proportions of variation in all three assemblages, potentially contributing to the observed spatial concordance between them and representing local environmental gradients along which these communities re‐assemble after the wet season, according to niche rather than dispersal processes.

Understanding the mechanisms that facilitate or inhibit invasion of exotic seaweeds is crucial in assessing the threat posed by their incursion and to define control options. In this paper, we consider how life history characteristics of the invading species and properties of the recipient environment influence the likelihood of invasion, giving particular emphasis to how disturbance influences the establishment, spread and persistence of introduced seaweed populations. Very few commonalities in key life history traits emerge since each species possesses a unique set of traits that confers a high capacity for invasiveness. Consequently, for seaweeds at least, predictions of invasibility based on life history characters alone are unlikely to be useful. In contrast, it is clear that disturbance is an important process in the establishment of these invasive species. With the possible exception of Caulerpa taxifolia, disturbance appears to be a critical factor that is either a key requirement (e.g., Codium fragile ssp. tomentosoides, Sargassum muticum and Undaria pinnatifida), or which accelerates (e.g., Fucus serratus) establishment and spread. The role of disturbance in the persistence of the invaders is more complex and depends on the species concerned. In several cases there is substantial evidence for positive feedback mechanisms that enable introduced species to persist in the absence of the disturbance factor that facilitated establishment in the first place. These circumstances define examples of ecological hystereses that pose particular challenges for management and control. The evidence suggests that, in several cases, preventing anthropogenically mediated disturbance to canopies of native seaweeds should be considered as a potential control option to minimise the risk of establishment of exotic species at high densities. However, for these kinds of introduced species, once they are established, control options that primarily target the disturbance are unlikely to represent viable management options.

The usefulness of surrogates to estimate complex variables describing community structure, such as the various components of biodiversity, is long established. Most attention has been given to surrogates of species richness and species diversity and has focused on identifying a subset of taxa as a surrogate of total community richness or diversity. In adopting a surrogate measure, it is assumed that the relationship between the surrogate(s) and total richness or diversity is consistent in both space and time. These assumptions are rarely examined explicitly. We examined the robustness of potential surrogates of familial richness and multivariate community structure for macrofauna communities inhabiting artificial kelp holdfasts by comparing among communities of dissimilar ages and among communities established at different times of the year. This is important because most benthic "landscapes" will be a mosaic of patches reflecting different intensities, frequencies, and timing of disturbances. The total abundance of organisms and familial richness of crustaceans or polychaetes were all good predictors of total familial richness (R2 > 0.68). In contrast, while the familial richness of other groups, such as mollusks and echinoderms, were well correlated with total familial richness for communities at an early stage of development, the strength of these relationships declined with community age. For multivariate community structure, carefully selected subsets of approximately 10% of the total taxa yielded similar patterns to the total suite of taxa, irrespective of the age of the community. Thus, useful surrogates of both familial richness and multivariate community structure can be identified for this type of community. However, the choice of technique for selecting surrogate taxa largely depends on the nature of the pilot data available, and careful selection is required to ensure that surrogates perform consistently across different-aged communities. While the specific taxa selected as surrogates will vary among different communities, and possibly even among similar communities at different sites, the techniques and the concepts we address are applicable to any community type.

1. Stream reaches found to be impaired by physical, chemical or biological assessment generally are associated with greater extent of urban and agricultural land uses, and lesser amount of undeveloped lands. However, because stream condition commonly is influenced by multiple stressors as well as underlying natural gradients, it can be difficult to establish mechanistic relationships between altered land use and impaired stream condition. 2. This study explores the use of Bayesian belief networks (BBNs) to model presumed causal relationships between stressors and response variables. A BBN depicts the chain of causal relationships resulting in some outcome such as environmental impairment and can make use of evidence from expert judgment as well as observational and experimental data. 3. Three case studies illustrate the flexibility of BBN models. Expert elicitation in a workshop setting was employed to model the effects of sedimentation on benthic invertebrates. A second example used empirical data to explore the influence of natural and anthropogenic gradients on stream habitat in a highly agricultural watershed. The third application drew on several forms of evidence to develop a decision support tool linking grazing and forestry practices to stream reach condition. 4. Although data limitations challenge model development and our ability to narrow the range of possible outcomes, model formulation forces participants to conceptualise causal mechanisms and consider how to resolve data shortfalls. With sufficient effort and resources, models with greater evidentiary strength from observational and experimental data may become practical tools to guide management decisions. 5. Such models may be used to explore possible outcomes associated with a range of scenarios, thus benefiting management decision-making, and to improve insight into likely causal relationships.

We investigated how the source and composition of stream dissolved organic matter (DOM) influenced rates of benthic bacterial C production (BCP) in 20 forested, headwater streams in southern Tasmania. We also assessed whether the source and composition of stream DOM was influenced by clearfell forest harvesting (1-19 y after harvest). Stream DOM was dominated by humic-and fulvic-like fluorescence (86.3-95.5%) as measured by parallel factor (PARAFAC) analysis of DOM fluorescence. Several reach-scale environmental variables showed significant positive (leaf-area index, sediment total N, organic C) or negative (stream temperature) linear relationships with BCP. However, an increasing contribution of terrestrial DOM, as measured by a decreasing fluorescence index (FI), was the strongest variable driving in situ benthic BCP (R 2 = 0.38, p = 0.004, n = 20). Forest harvesting did not significantly affect DOM source despite the major reach-scale disturbance that clearfell forestry represents. Nevertheless, conflicting evidence was found for changes in DOM composition after harvesting. Catchment-scale processes probably are more important than reach-scale processes in determining stream DOM biogeochemistry because clearfelled areas are small relative to the total catchment area. Our results demonstrate that freshly leached, terrestrial DOM can influence stream ecosystem processes through the tight biogeochemical linkage that exists between forested, headwater streams and their surrounding terrestrial environment.