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Large continuous rainforests are the main hope for sustaining the population of large-bodied vertebrates that cannot cope with fragmentation or unsustainable hunting. The Brazilian Atlantic forest is considered a biodiversity hotspot and although highly fragmented, it still contains large forest patches that may be important for the conservation of mammals that require large areas. Here, we estimated species richness, density and biomass of medium- and large-sized mammals along the largest remnant of the Atlantic rainforest, Brazil (the Serra do Mar bioregion), an estimated area of 8000 km2. We recorded 44 species based on 4090 km of diurnal line transects and camera traps, animal tracks and interviews in 11 continental regions and two large land-bridge islands. We found high levels of similarity in mammalian composition between pairs of sites in the continental forest sites (0.84-1), but much lower similarity between pairs from the continental forest sites and the two large land-bridge islands (0.29-0.74) indicating potential local extinctions or poor dispersal of continental mammals to these islands. In addition, we found that the density and biomass varied 16- and 70-fold among sites, respectively. Mammalian biomass declined by up to 98% in intensively hunted sites and was 53-fold lower than in other Neotropical non-fragmented forests. Although this large forest remnant is able to maintain a high diversity of medium- and large-bodied mammal species, their low density and biomass may affect the long-term persistence of these populations and the ecosystem services they provide

a b s t r a c tMost tropical rainforests have been defaunated of large-bodied mammals and the cascading effects of such extirpations have been poorly studied, particularly on other animals. We used a natural experiment in the Brazilian Atlantic rainforest to investigate the ecological responses of rodents to the functional extinction of a dominant terrestrial mammal, the white-lipped peccary (Tayassu pecari). We detected a 45% increase in the abundance and a decrease in diversity of rodents in defaunated forests. Two of these species (Akodon montensis and Oligoryzomys nigripes) are important hosts of Hantavirus, a lethal virus for humans. Stable isotope ratios (d 13 C and d 15 N) derived from the hair of rodents and peccaries and their food resources indicate that at least two rodent species shifted to a diet more similar to peccaries in the defaunated forest. Because most tropical rainforests are facing dramatic extirpation of large mammals, we can expect changes in the composition and structure of small mammal communities with potential consequences for human health even in non-fragmented landscapes.

Forest fragmentation and defaunation are considered the main drivers of biodiversity loss, yet the synergistic effects of landscape changes and biotic interactions on assemblage structure have been poorly investigated. Here, we use an extensive dataset of 283 assemblages and 105 species of small mammals to understand how defaunation of medium and large mammals and forest fragmentation change the community composition and diversity of rodents and marsupials in tropical forests of South America. We used structured equation models to investigate the relationship between small mammal species, functional and phylogenetic diversity with forest size, forest cover and the occurrence of medium and large mammals. The best‐fit model showed that defaunation reduced functional diversity, and that species diversity of small mammals increased with forest patch size. Forest cover did not affect functional and phylogenetic diversity. Our results indicate that occurrence of medium and large sized mammals (probably acting as predators, or competitors of small mammals) and forest patch size help to retain species and functional diversity in small mammal communities. Further, the number of species in a small mammal community was critical to the maintenance of phylogenetic diversity, and may have a pronounced influence on the ecological functions played by small mammals. Identifying how phylogenetic and functional diversity change in function of human pressures allows us to better understand the contribution of extant lineages to ecosystem functioning in tropical forests.